PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00516.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 143aa    MW: 16429.2 Da    PI: 10.4092
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00516.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.79.3e-111396289
                             HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86
                             F  +ly+i++d + + +isws +n nsfvv+d +++ +++L k      +n+   + +L   gFk v +  ++        eF+h+ F
  Rsa1.0_00516.1_g00013.1 13 FYLHLYQIVDDCSSDPIISWSkTNDNSFVVWDLKRLRSDILLKssSVLGKNLPEMMAKLRSHGFKTVFKGPGE-------LEFSHDDF 93
                             8889*****************8888****************663366789*****************999998.......9******* PP

                             XXX CS
             HSF_DNA-bind 87 kkg 89
                              ++
  Rsa1.0_00516.1_g00013.1 94 ARD 96
                             986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-13696IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-79105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-91197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.9E-91397IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVRQLRTGSS SSFYLHLYQI VDDCSSDPII SWSKTNDNSF VVWDLKRLRS DILLKSSSVL  60
GKNLPEMMAK LRSHGFKTVF KGPGELEFSH DDFARDPLMK KMMAKALSER IERFDAQIKT  120
LKCILKAKKA SIKVESLFQN LRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00516.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479652.11e-101PREDICTED: heat shock factor protein HSF8-like
TrEMBLA0A078HHE26e-82A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBLA0A0D3C0166e-82A0A0D3C016_BRAOL; Uncharacterized protein
STRINGBo4g139630.11e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-27Winged helix-turn-helix transcription repressor DNA-binding