PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00513.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 337aa    MW: 38324.5 Da    PI: 8.7045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00513.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.3e-3034119184
                              EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F+
  Rsa1.0_00513.1_g00003.1  34 FEKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QTGTLLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNNGDTVSFH 118
                              99*********************999**7544.46789***********************************************9 PP

                              E CS
                       B3  84 l 84 
                              +
  Rsa1.0_00513.1_g00003.1 119 R 119
                              4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-3830128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2932119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-2733119No hitNo description
PfamPF023621.4E-2734120IPR003340B3 DNA binding domain
PROSITE profilePS5086313.90234143IPR003340B3 DNA binding domain
SMARTSM010191.3E-2334134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSTRASTHQD PAENGASGSD NNNNLNPAMR DLMFEKVLTP SDVGKLNRLV IPKQHAENYF  60
PLEDNQTGTL LDFQDKNGKM WRFRYSYWNS SQSYVMTKGW SRFVKEKKLN NGDTVSFHRC  120
YVPEDNEPEK RKNILFIDWR HRPDSNLVHN NNHHHYPIFG APPYPTASYY PVTEYSMPHY  180
GRFPPLYHNQ FLGYGYGPYG RSVSGGRYYA GSPLDHHHQW NLGRSEPLVY DSYPVFPATR  240
VTSSSTMLPP SPPSQPPQEG TAKKLRLFGF DVEESSSSRE ARGGMGVAGH SSSSPVVIRD  300
DESLWRSPRG EMGGLSSSVV KLSDDEEYKR KGKSLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48281432114B3 domain-containing transcription factor NGA1
5os9_B2e-48281432114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00513.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469605.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-157NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI80.0A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBra008552.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-150B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]