PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00511.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 310aa    MW: 34039.6 Da    PI: 4.5431
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00511.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35401322103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+  +elisw+e+g++f+v++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+
  Rsa1.0_00511.1_g00007.1  40 FLTKTYQLVDDPVHDELISWNEDGSTFIVWKAAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFR 116
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k ll++i+r+k +
  Rsa1.0_00511.1_g00007.1 117 RGEKILLRDIQRRKIS 132
                              *************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5536129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3637129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3337129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1701.5E-5170198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPGEQIGEAG GGCSAGNSGG SSGGGGGGGG ESQRSIPTPF LTKTYQLVDD PVHDELISWN  60
EDGSTFIVWK AAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF SNDCFRRGEK  120
ILLRDIQRRK ISQQAAAAAA AAVPVLAHVV SPSNSGEEQR TMTSCTTAPE LMEENERLRK  180
ENVQLSQELT KLKGLYSNIY KLMSNFTSGE EECAKPLDLM PGRDEIGEAV ETLIGLKVGE  240
DLTPRLFGVS IGVKRARRDE ELGGAAVEED DERREAGNQE EEEQGSDSKS EPMEENNHGD  300
HDGPWLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-272712917129Heat shock factor protein 1
5d5v_B2e-272712917129Heat shock factor protein 1
5d5v_D2e-272712917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00511.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325471e-116AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477009.10.0PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_018477011.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-139HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A3P6A9F21e-153A0A3P6A9F2_BRACM; Uncharacterized protein
STRINGBra000749.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-131HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]