PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00503.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 226aa    MW: 25124.9 Da    PI: 5.3981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00503.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19102152255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  Rsa1.0_00503.1_g00007.1 102 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 152
                              59*******.***********9998..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23102161IPR016177DNA-binding domain
CDDcd000181.79E-30102162No hitNo description
PROSITE profilePS5103223.907102160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32102161IPR001471AP2/ERF domain
SMARTSM003803.7E-36102166IPR001471AP2/ERF domain
PfamPF008478.3E-13103152IPR001471AP2/ERF domain
PRINTSPR003674.4E-13103114IPR001471AP2/ERF domain
PRINTSPR003674.4E-13142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSGFDYSELM SSPDSVNNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR  60
DAFSSGWSPT VPPISSPAVV EEEKPATATA TAKAAPRQKG MQYRGVRRRP WGKFAAEIRD  120
PKKNGARVWL GTYETPEDAA VAYDRAAFQL KGSKAKLNFP HLIGTCEYEP VRIRPRRRSP  180
EPSVSDYSSP EQKSVGHVEE GESSFAVDQL YSDGGYLMDR SSYSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3199167270ATERF1
3gcc_A2e-3199167270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00503.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478704.11e-166PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-123ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078GDM41e-138A0A078GDM4_BRANA; BnaC04g49870D protein
TrEMBLA0A078GZB81e-138A0A078GZB8_BRANA; BnaA04g25900D protein
TrEMBLA0A3P6CCL11e-138A0A3P6CCL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D0C91e-138A0A3P6D0C9_BRACM; Uncharacterized protein
TrEMBLM4F9671e-138M4F967_BRARP; Uncharacterized protein
STRINGBra037630.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-100ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]