PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00498.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 42733.1 Da PI: 7.6963 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.3 | 8.3e-26 | 139 | 183 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e+ Rsa1.0_00498.1_g00012.1 139 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVET 183 79****************************************996 PP | |||||||
2 | QLQ | 53.7 | 6.5e-19 | 73 | 109 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k Rsa1.0_00498.1_g00012.1 73 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 109 67*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-12 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.247 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.8E-13 | 75 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.046 | 139 | 183 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.3E-22 | 140 | 182 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDLQLKQWRS QQQQQTEPDE QPSAAKIPKH VFDQFQSHSA ASTALPLFTP DPTPSKLSSL 60 SSDSSARFPK MGSFFSWAQW QELELQALIY RYMLAGAAVP QELLLPIKKS LLHLSPSYFL 120 HQHLPHYQPA WYLGRGAMDP EPGRCRRTDG KKWRCSRDVF AGHKYCERHM HRGRNRSRKP 180 VETPTVNATT TTTTMAAAAA AAPAATTTSF AFGGGEEVGQ GGSPCFFFSG SSNSSSELLN 240 LSQSCSEMKQ ESNNKRPYES HGFGNNNTSD GGHTLRHFFD DWPRSEADNS STPMTSATCL 300 SISMPGNSSS DVSLKLSTGN EEEEARTNNN NNNGRDQQNM SSWWSGGGGG SHLNNNHQMG 360 GPLAEALRSS SSTSPTSVLH QLGVTTQAFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00498.1_g00012.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY102636 | 1e-177 | AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds. | |||
GenBank | BT026472 | 1e-177 | BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013687589.1 | 0.0 | growth-regulating factor 3-like | ||||
Swissprot | Q9SJR5 | 1e-180 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A078I1P7 | 0.0 | A0A078I1P7_BRANA; BnaAnng07360D protein | ||||
TrEMBL | A0A3P6CQW1 | 0.0 | A0A3P6CQW1_BRACM; Uncharacterized protein | ||||
STRING | Bra023066.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-82 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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