PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00492.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 36357.9 Da PI: 8.9686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.7 | 9e-57 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL++kv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkat Rsa1.0_00492.1_g00005.1 17 LPPGFRFHPTDEELITHYLHNKVLNIDFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKAT 101 79**************************99.88***************99999********************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkdke+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrl Rsa1.0_00492.1_g00005.1 102 GKDKEIFR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 142 ********.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-65 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.981 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-30 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
METFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 QIGSYGGSSL PPLNDSSPYS NDKTKTEQSY VPCFSNQTET RGTLLNYFSN NPALCSIPLY 240 QPQSLHVSDP VLTQEQSVSQ AMFENNRRQS FKTLSVSQET GVSNTDISSS NIEYGRKGFD 300 HQEVPSSSTG PVDLEPFWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-57 | 14 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-57 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-57 | 14 | 173 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00492.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966757 | 0.0 | KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468344.1 | 0.0 | PREDICTED: NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A078FHY6 | 0.0 | A0A078FHY6_BRANA; BnaC02g01470D protein | ||||
STRING | Bo2g008760.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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