PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00476.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 33931.1 Da PI: 9.4208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.5 | 3.8e-34 | 59 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lp+G++F+Ptd+e++ e+L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r++ Rsa1.0_00476.1_g00004.1 59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIEGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKV 142 799**********99.99******9996666553332224666657**********.666777899******************74 PP NAM 79 k.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l Rsa1.0_00476.1_g00004.1 143 HtdsevggETRWHKTGKTRPVLT-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 43455555778************.9*************6658999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-38 | 53 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.478 | 59 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-15 | 60 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MTWCNDRSDV QTVERIIPSP TAADSPAASF PVSCHKTCPS CGHKFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIEG ENGICYTHPE KLPGVSKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RPVLTGGRVR GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GTNEEEREGE LVVSKVFYQT QPRQCGGSVA AVATAKERPY 240 LHGHGHQLGG GGGGRHLHYH LHNVKGSGGG GSDGASEYYN NIPAIISFNQ TGIQNHLVHG 300 SQPFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00476.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056658 | 0.0 | DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696599.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 0.0 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A078HCI7 | 0.0 | A0A078HCI7_BRANA; BnaA01g08370D protein | ||||
TrEMBL | A0A398AJV5 | 0.0 | A0A398AJV5_BRACM; Uncharacterized protein | ||||
STRING | Bra011034.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-180 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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