PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00469.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 307aa MW: 35358.9 Da PI: 6.3791

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00469.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	175	218	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + Rsa1.0_00469.1_g00001.1 175 KRVKRILANRQSAQRSRVRKLQYITELERSVTSLQAEVSVLSPR 218 8999********************************98877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	171	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	173	236	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.6E-11	175	226	No hit	No description
SuperFamily	SSF57959	5.47E-11	175	229	No hit	No description
Pfam	PF00170	3.7E-9	175	218	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.72E-22	176	226	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSF QKLSSTAVQN PSWVDEFLDF SACRRGNHRR SISDSIAFLE 60 APFVRGHTRL ENQHFDRFDD EQFMSMFKDD DGLHHNNNNN NNNNLSRDNN NNELSSNTST 120 LSDHNSFNGD KEQPSDHNMK HNEEVYSQCK TEPEDGMASN NDSGNSSVNR IIDPKRVKRI 180 LANRQSAQRS RVRKLQYITE LERSVTSLQA EVSVLSPRVA FLDHQRLLLN VDNSSLKQRI 240 AALAQDKIFK DAHQEALKRE IERLREVYQQ QSLEKMENAN HSQVTGTRAN SDVDIKPSIE 300 QEELFNV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00469.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435209.1	0.0	PREDICTED: basic leucine zipper 34
Swissprot	F4IN23	1e-145	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A3N6SNN9	1e-178	A0A3N6SNN9_BRACR; Uncharacterized protein
TrEMBL	M4CKF4	1e-178	M4CKF4_BRARP; Uncharacterized protein
STRING	Bra004689.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-142	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]