PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00463.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29310.6 Da PI: 9.1663 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d+v G g W+t ++ g++R++k+c++rw++yl Rsa1.0_00463.1_g00020.1 15 RGAWTEKEDKILKDYVMINGEGKWSTLPNQAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Rsa1.0_00463.1_g00020.1 68 RGNISSDEEELIIRLHNLLGNR-WALIAGRLP-GRTDNEIKNHWNTN 112 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.641 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.36E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.66E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.335 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-23 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMRKRASVKK EELNRGAWTE KEDKILKDYV MINGEGKWST LPNQAGLKRC GKSCRLRWRN 60 YLRPGIKRGN ISSDEEELII RLHNLLGNRW ALIAGRLPGR TDNEIKNHWN TNLRKTLPKS 120 QTNQQKSIKD FNSNNMNKVC VIRPKAIRFP KTLTIQKQSS IGCTSLLTVK ENVMDHQAGS 180 PSLLGDLKID FDKIHSEFLF SDLMDLDGLG CGNVMSLVSS DEVLGDYVPA DASCHGNLDL 240 NRPFTSCLQE DCLWNFNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00463.1_g00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975664 | 0.0 | KM975664.1 Brassica napus MYB transcription factor 123-1.1 (MYB123-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449558.1 | 0.0 | PREDICTED: transcription factor TT2 | ||||
Swissprot | Q9FJA2 | 1e-124 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A0N7AML8 | 1e-169 | A0A0N7AML8_BRANA; MYB transcription factor 123-1.1 | ||||
TrEMBL | A0A397Y9E9 | 1e-169 | A0A397Y9E9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F382 | 1e-169 | M4F382_BRARP; Uncharacterized protein | ||||
STRING | Bra035532.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-126 | MYB family protein |