PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00461.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35699.1 Da PI: 6.8376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.2e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W ++++g +R++k+c++rw++yl Rsa1.0_00461.1_g00005.1 14 KGPWSPEEDAMLKFYIEKHGTGnNWIQLPHKIGIKRCGKSCRLRWLNYL 62 79*******************************55************97 PP | |||||||
2 | Myb_DNA-binding | 35.9 | 1.7e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Rsa1.0_00461.1_g00005.1 69 GGFTNEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.396 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-26 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 19.578 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-6 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRAPCCDKT VVKKGPWSPE EDAMLKFYIE KHGTGNNWIQ LPHKIGIKRC GKSCRLRWLN 60 YLRPNLKHGG FTNEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLISK 120 QGKAIHQQLS LRLEPETISK RSSFGQNQIL MIHDENSKPP LNQTLHNQKA DPSITSFAME 180 EKRMDVKDPV LELFSWEQNR VWFDIDHNAA SSSYHHHASP HLNSMTTTTS SSIGTNSSLQ 240 MSHYTINNND QGDQEMFFMA GFDNLQNELF DEIINNNTAE FEFRGTETLD NNCLGHEINS 300 FVDYPLKDNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00461.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189183 | 0.0 | AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468738.1 | 0.0 | PREDICTED: transcription factor RAX3 | ||||
Refseq | XP_018468751.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | F4JSU0 | 1e-156 | MYB87_ARATH; Transcription factor MYB87 | ||||
TrEMBL | A0A0D3A165 | 0.0 | A0A0D3A165_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FL80 | 0.0 | A0A3P6FL80_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g003420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 1e-143 | myb domain protein 87 |
Publications ? help Back to Top | |||
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