PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00459.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 387aa    MW: 43000.2 Da    PI: 7.7183
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00459.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.9e-1819109273
                 trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                              Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e
  Rsa1.0_00459.1_g00004.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpapehshdsqsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYE 104
                              **************777666665555666666666777777669999*************************************** PP

                 trihelix  69 kkrts 73 
                              ++r +
  Rsa1.0_00459.1_g00004.1 105 RRRVE 109
                              *9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138372.1E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEH SHDSQSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQIYQ ALFDVVESKT HPSLIAATTV TAAVAAAAAS  180
GNSSGGGLQI QKMIQQRQQG LGFVQIHQMI QPHVLLPLQP QPPPPPPPPP SQALQPRPLI  240
LSPPQPPSFH AQPILPTDTS SDSDTSEHPD TSRAKRRRTV PTTTAGPSGA GIDNAETEEG  300
ETVVAAAFSR SASLIANAIR ESEERQERRH KEVMSLEERR LMIEESNVQI NREGMNGLVE  360
AINKLASSIF ALASSSHHNN QQQGGPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00459.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489614.10.0PREDICTED: protein SCARECROW-like isoform X1
TrEMBLA0A3P6F9Q40.0A0A3P6F9Q4_BRAOL; Uncharacterized protein
STRINGBo5g065920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-103Trihelix family protein