PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00457.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 428aa    MW: 49156.6 Da    PI: 5.6174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00457.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.92.5e-3341352128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               pGf+F+P deelv +yL++k+ g++  ++ vike++i++++PwdL+  +k+k+++  wyf s+r+++   g+r++r t sg+Wk 
  Rsa1.0_00457.1_g00002.1   4 KPGFEFRPYDEELVGYYLRHKILGNDSLVDGVIKEIKICSFDPWDLRfqSKIKSRDVVWYFLSRREEN--VGSRQSRRTPSGFWKL 87 
                              59************************999899**************8423777777789999888776..589************* PP

                      NAM  86 tgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tg   +v ++       + ++g k++L+f kg++++ +k+dWvmhe + 
  Rsa1.0_00457.1_g00002.1  88 TGDPVDVNDRwghlsgFRGKIGYKRVLTFGKGKSSS-SKSDWVMHELHY 135
                              *********97766664456**********998887.8********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.7623153IPR003441NAC domain
SuperFamilySSF1019416.02E-344153IPR003441NAC domain
PfamPF023653.1E-195134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGEKPGFEFR PYDEELVGYY LRHKILGNDS LVDGVIKEIK ICSFDPWDLR FQSKIKSRDV  60
VWYFLSRREE NVGSRQSRRT PSGFWKLTGD PVDVNDRWGH LSGFRGKIGY KRVLTFGKGK  120
SSSSKSDWVM HELHYTLLPE HKRTYVICRL EYKGDDMNIL SANPTYPIPT FAPTMANSAS  180
SVVDQSSNGN SGYYNTLSEY DSAYQGHQFN GNYETQPSFQ GYTEYLNSTS EYDLANGSHW  240
FSNLQQQAPY SAPYQDDSDL WKQVVQENWT SLVDERTYMR EDSSHYRPKT PVTGIFPDDS  300
SDDDDTDSTI GRDTWSSTDS VGSKDVQYHT PKDDTPSLSS VVPLHNPEPQ EQPKHLELQL  360
QGKEKKSECE WKMAEDSTKK VPSTTAVKQS WIVLEEMSQR NSRWIHLKNM IIGFLLFLSI  420
IGWIILVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-16515022165NAC domain-containing protein 19
3swm_B4e-16515022165NAC domain-containing protein 19
3swm_C4e-16515022165NAC domain-containing protein 19
3swm_D4e-16515022165NAC domain-containing protein 19
3swp_A4e-16515022165NAC domain-containing protein 19
3swp_B4e-16515022165NAC domain-containing protein 19
3swp_C4e-16515022165NAC domain-containing protein 19
3swp_D4e-16515022165NAC domain-containing protein 19
3ulx_A3e-16513217137Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00457.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073234e-37AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965664e-37AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026844e-37CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437290.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-160NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A0D3C7170.0A0A0D3C717_BRAOL; Uncharacterized protein
STRINGBo5g002860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-141NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]