PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00453.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 304aa MW: 34445.7 Da PI: 7.7911 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.6 | 9.8e-31 | 87 | 143 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa++Gg+a+DGCgEfmps ge g+++al+C+ C+CHRnFHR+eve e Rsa1.0_00453.1_g00003.1 87 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GEVGSIEALTCSVCNCHRNFHRKEVEGE 143 689*************************9.888*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-27 | 88 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-28 | 88 | 150 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.5E-30 | 89 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.399 | 90 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.48E-18 | 207 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 208 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-27 | 214 | 270 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNIASQEDHD MPIPLNTTYV GGGGHGHMIH HPHDHHAADS APPTHKNITT TQPPQRPLHA 60 NGHGNNNDDD HQDPYHVGYH AIIKKPMIKY KECLKNHAAA MGGNATDGCG EFMPSGEVGS 120 IEALTCSVCN CHRNFHRKEV EGETPATAIS SYHQPPPPRK LMVNHHNIRS AMPHQMIMPI 180 GVSNYRYMHN LESDDFMEQE GVTPASRPPP YNQKKRFRTK FTPEQKEKML SFAERVGWKI 240 QRQEDSVVQR FCEEIGVKRR VLKVWMHNNK LHFSNKNTSN NINLDNDKIN NVNNVDLSGN 300 NDMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-24 | 214 | 270 | 17 | 73 | ZF-HD homeobox family protein |
1wh7_A | 1e-24 | 215 | 270 | 18 | 73 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00453.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493456 | 0.0 | AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440. | |||
GenBank | AY074266 | 0.0 | AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | AY096738 | 0.0 | AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F14L17 | 0.0 | AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435472.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 isoform X1 | ||||
Refseq | XP_018435478.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 isoform X2 | ||||
Refseq | XP_018435483.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 isoform X1 | ||||
Refseq | XP_018435487.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 isoform X2 | ||||
Swissprot | Q9M9S0 | 1e-168 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A3N6PNJ2 | 0.0 | A0A3N6PNJ2_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6F3B0 | 0.0 | A0A3P6F3B0_BRAOL; Uncharacterized protein | ||||
STRING | Bra026219.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-148 | homeobox protein 31 |