PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00423.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 446aa    MW: 49591 Da    PI: 6.3301
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00423.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.2e-31245299155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Rsa1.0_00423.1_g00010.1 245 KPRMRWTPELHESFLKSVNKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 299
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.015242302IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29243300IPR009057Homeodomain-like
SuperFamilySSF466898.24E-17244299IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23245300IPR006447Myb domain, plants
PfamPF002492.2E-8247298IPR001005SANT/Myb domain
PfamPF143795.7E-22335381IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNSRHRLVST AQDECDKRVQ KACSSSHLSP AYNFLNVQSE TMKSPFIRSQ SPDWPKNNSS  60
SRGTFSRSST FCTNLYSSSS STSETQKHLG NSLPFLPDPS AHSTHSACGV ESARSPSIFS  120
EDLSNPFDGD NNSGLLAKDF LNLSGDACSN GGGFHDLDCS NDSYCLSDQM ELQFLSDELE  180
LAITDRAETP RLDEIYETPL ASSSNPVTGK SPSQRCDAAG AMCIDAAVSS HPSPKSSSAS  240
AANHKPRMRW TPELHESFLK SVNKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA  300
KYMPERKEEK KNVNSEEKKL ALSNSEADDK KRGAIQLTEA LRMQMEVQKQ LHEQLEVQRV  360
LQLRIEEHAK YLEKMLEEQR KAGRLFSPSD DSKPDSQNMS QTEASLPQPP PSSAKNIASE  420
TEDEQCESPQ KRRKLEDNTK PQDSER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-25245302259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00423.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441996.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_018441997.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A078HXW50.0A0A078HXW5_BRANA; BnaA01g30110D protein
STRINGBra039364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]