PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00422.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26373.9 Da PI: 8.3715 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 51 | 97 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e ErrRR+riN +++ r l+ + K +Ka+ L k+v+ +++L Rsa1.0_00422.1_g00016.1 51 RKHRESERRRRERINYNLNKFRNLISCD-----SKTDKATLLAKVVQRVNEL 97 57************************98.....7***********9987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.487 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-9 | 48 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-10 | 51 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-5 | 51 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-4 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.49E-5 | 134 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.4E-5 | 134 | 210 | No hit | No description |
CDD | cd04873 | 1.78E-4 | 135 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQPEISDQIL YSFLTGGSCA SSTTTTRRSS FFPCAMEDTS SQDKALATNL RKHRESERRR 60 RERINYNLNK FRNLISCDSK TDKATLLAKV VQRVNELKQQ TLDISKETVP SETDEISVLN 120 FEDCSNEDGR IIFKVSFCCE DRPDLMKDLV ETLRSLRMET VYAYMTTIGG RTRNDLVVVG 180 NKEQHSVESV TLLQNALKSL LERSNQSVMM GHGGGEERSK RRRPVDHIIR V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 62 | KHRESERRRRER |
2 | 56 | 61 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00422.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458584.1 | 1e-169 | PREDICTED: putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 1e-102 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A0D3BXG0 | 1e-133 | A0A0D3BXG0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CQJ6 | 1e-133 | A0A3P6CQJ6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g112750.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 2e-97 | bHLH family protein |
Publications ? help Back to Top | |||
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