PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00421.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 275aa    MW: 30334.2 Da    PI: 8.5988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00421.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057193123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+Cp C+k Fs++  L  H++ H
  Rsa1.0_00421.1_g00001.1 71 YTCPFCNKGFSTSQALGGHQNAH 93
                             9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-76898No hitNo description
Gene3DG3DSA:3.30.160.604.3E-66997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0717198IPR007087Zinc finger, C2H2
PfamPF139121.6E-57195IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSSSSSSTPQ PVVIEVMKES KEIAAESNNL RLGSPQETMS RSHENPAFRP GPVRTGSEIM  60
KFYPSKSNKI YTCPFCNKGF STSQALGGHQ NAHKQERDWD KKRKEMEANF PGLAFLNPYL  120
DKPHLLLGGY SPDALSNDNH LGITLEPFKR ARIGGVYPSF SGGLTNMTIV PRMTPTRFFT  180
GTTCTNGSSS MGIAPRPSYN NNPPMIPRNI PPFPPPPRTI NLSSVCYSQN NALSEKNLIS  240
KVGNHKIVEI DDDDDNDQPE EGKFKSWGID LSLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00421.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895790.0AC189579.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011I15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438840.10.0PREDICTED: zinc finger protein JAGGED-like
TrEMBLA0A3P6E6061e-153A0A3P6E606_BRAOL; Uncharacterized protein
STRINGBo2g155500.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-91C2H2 family protein