PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00411.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 611aa    MW: 66979.4 Da    PI: 6.3812
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00411.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like56.65.5e-1884138155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k +++Wt+ L ++F ea+e++G  ++AtPk+il++m++k Lt +h+ S LQk R 
  Rsa1.0_00411.1_g00013.1  84 KSKIKWTEALENHFYEAIEHIGSVHRATPKKILKFMNLKFLTKAHISSKLQKCRQ 138
                              6799************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-1782142IPR009057Homeodomain-like
SuperFamilySSF466899.68E-1082141IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-1684138IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MNNEIEQETL SSGALCSIRK PIKPNDLNTI SKHIDHTIND GSKKIQDDAD GSKKMQDDTD  60
GSKKTEKTTL SSDPCDSSSQ ATQKSKIKWT EALENHFYEA IEHIGSVHRA TPKKILKFMN  120
LKFLTKAHIS SKLQKCRQTV KRDEESMRRP RMAMYPEFSS AAGYNYRQHP YNYNPRLGNR  180
NLFNGQPGYG LGQSSSMMKN NAGLHDSLNY MNRRPIYDLS QTGSKLFPNR GNLGFQNGKL  240
PLKEKWRSIP GTSQAPRFGQ YGATSNVLGM NYNPTTGTTG SSYAGVRTDE SRDLVGLGGI  300
GVNGNGNGSF GGIRVNGTGS GSGSLQGMSV HGNDHGSLDG IRGHCPGNGS LEGIRVHDNS  360
NDSLGGIRVH GSGTGYVGEI GVHGTGNGNG SLGENFDMNW NFSNNNMSNH GSSTSMFPSV  420
FSSFLDNKDQ SQNSLIAQTG GVIPGLENSK IFNDHHDIDK IFSDIINSQF HHQNQHQGNL  480
TGVNLEAPTA YPLEDINSWS FNDGTDNEEL LNSLAANPDM YFPTHDMNIT NQGNNNHEET  540
FNSLAANPEM HFPTQDMNIT NQGNNHEETF KSLAANPEMH FPTQEMNITN QASLDHDNDE  600
DIMNYLSSIL T
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00411.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435581.10.0PREDICTED: putative uncharacterized protein DDB_G0282133
TrEMBLA0A078GW480.0A0A078GW48_BRANA; BnaA02g33170D protein
TrEMBLA0A3P6AYL50.0A0A3P6AYL5_BRACM; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.13e-24response regulator 21