PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00407.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 343aa    MW: 38805.1 Da    PI: 10.559
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00407.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35e-31277335360
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Rsa1.0_00407.1_g00022.1 277 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPAMLIVTYEAEHNHPK 335
                              99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-16237273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-33263335IPR003657WRKY domain
PROSITE profilePS5081130.503270336IPR003657WRKY domain
SuperFamilySSF1182901.15E-26273335IPR003657WRKY domain
SMARTSM007743.3E-37275335IPR003657WRKY domain
PfamPF031061.8E-26277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLSRPPHQQD QVSLVSETRE AVSRFKRVGS LLSKSVGHAR  60
FRRANNKKPL THLSQQTIFL DPCRLQRTQL PESSSQKLRS GFHDLSLRPA DSLTLGTRSF  120
SLKPPPLLQL NHQAMPSSTT MFPEHQQQQL HERLQAHHLH QQQQQQQRHH QAEIMLRKCN  180
GGGISLSFDN SSCTPTMSST RSFVSSLSID GSVANAEGRN SFQLIGDQSL PHSKRKCLLK  240
GDEHGSRCHC SKKRKHRVRR SIRVPAISNK VADIPPDDYS WRKYGQKPIK GSPYPRGYYK  300
CSSMRGCPAR KHVERCVEDP AMLIVTYEAE HNHPKLPSQA VTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20263338276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233254KRKCLLKGDEHGSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00407.1_g00022.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482350.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-166WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3P6C6980.0A0A3P6C698_BRAOL; Uncharacterized protein
STRINGBra021652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-165WRKY DNA-binding protein 21