PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00398.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 388aa    MW: 44036.3 Da    PI: 4.526
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00398.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.6e-34201122102
                              HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
             HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                              Fl+k ye+++d++++++isws+ng nsfv++d++ f++++LpkyFkhsn++SF+RQLn+YgF+kv+ ++         weF+++ F
  Rsa1.0_00398.1_g00016.1  20 FLRKCYEMVDDSSTDSIISWSSNGdNSFVISDTTLFSTHLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------WEFANDGF 96 
                              9********************77769****************************************999.........******** PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +g+kell+++ r+k+
  Rsa1.0_00398.1_g00016.1  97 VRGQKELLKNVIRRKN 112
                              **********999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3216110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-5716110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-2920110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVKSSSDRVD SSSSPSVAPF LRKCYEMVDD SSTDSIISWS SNGDNSFVIS DTTLFSTHLL  60
PKYFKHSNLS SFIRQLNIYG FRKVDADRWE FANDGFVRGQ KELLKNVIRR KNVQSSTSSE  120
QQHQRKTCTA DADDACQEKE CSGESELWKE VDVLKGDKKA LAQELVKVRQ YQESTDAKML  180
HLEDRVQGME ESQQEMLSFL VMVMQNPSLL VQLLQPKENS WRKTEGGGGG GAKILEEVTD  240
EGETTNSKGL PLVTYQKTPS EGTAAKSSSN EVNDFLRNAD MLKFCLDENR VPLIIPDLYD  300
DGAWEKLLLL SPSKKKKNKM QEKNDVTLEE EEDEDGRMEL DKSLALELIE EEMEKADDFD  360
FDIGQLTPER SRNLEILTQH MRLLASDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-241111019129Heat shock factor protein 1
5d5v_B8e-241111019129Heat shock factor protein 1
5d5v_D8e-241111019129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00398.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446227.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3CYU40.0A0A0D3CYU4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q4Y30.0A0A3N6Q4Y3_BRACR; Uncharacterized protein
TrEMBLA0A3P6FZ890.0A0A3P6FZ89_BRAOL; Uncharacterized protein
STRINGBo6g106450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-169heat shock transcription factor A8