PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00393.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 266aa MW: 31224.6 Da PI: 9.5129 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 74.8 | 1.5e-23 | 56 | 147 | 6 | 97 |
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +w+ +D +++L+G++++++++g + +d+d fy + k+ i++ +sk+ql+e +++LK +f+ ++++ gk+ f+++ +++ f l Rsa1.0_00393.1_g00009.1 56 IWNISDVLLILKGIVEYENERGFRYNSDWDIFYGYTKDLINIPFSKKQLMEQVKKLKMRFEFYFQRSNVGKQLCFTNSYEKELFRL 141 8************************************************************************************* PP DUF573 92 skkiWg 97 s +iW Rsa1.0_00393.1_g00009.1 142 STIIWA 147 *****7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.1E-17 | 56 | 146 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MVNSSDSFLE SQQKHKSQRS SSSSSSLRRK HEDDGEDVSY TEAMVRWRKQ QKKYLIWNIS 60 DVLLILKGIV EYENERGFRY NSDWDIFYGY TKDLINIPFS KKQLMEQVKK LKMRFEFYFQ 120 RSNVGKQLCF TNSYEKELFR LSTIIWAKNE TEDAFSENRQ DQAKVLVLNK GVPLVDQKRV 180 IDTRKDKDVS QDPGGMDEFY VLQDALEAAT SFQSLGKTHQ KMLFQNLKTL GAQRRKELAG 240 EWKALLNEEM ELHIKKLTFL GKLPCA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00393.1_g00009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443714.1 | 1e-175 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
Swissprot | Q9SJM4 | 4e-26 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | A0A0D3D5U0 | 1e-136 | A0A0D3D5U0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g043690.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14516 | 8 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36340.1 | 2e-28 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|