PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00387.1_g00044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35607.5 Da PI: 5.0201 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.5 | 8.8e-56 | 20 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l pGfrFhPtdeel+++yLk+kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkat Rsa1.0_00387.1_g00044.1 20 LLPGFRFHPTDEELISHYLKPKVLNTLFSA-IAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKAT 104 579************************999.88***************98999********************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ +++lvg+kktLvfy+grapkg kt+Wvmheyrle Rsa1.0_00387.1_g00044.1 105 GKDKEIFR-EKALVGMKKTLVFYEGRAPKGAKTNWVMHEYRLE 146 ********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 17 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-30 | 22 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDYEVSRICE IVEDSEQIDL LPGFRFHPTD EELISHYLKP KVLNTLFSAI AIGEVDLNKV 60 EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FREKALVGMK 120 KTLVFYEGRA PKGAKTNWVM HEYRLEGIYS TDNLPKTAKN EWVISRVFQK GADGKKMHLY 180 QGLGSGINQV EPAGLPPLMD SSFAGSLSNV TCFSDQTTVE DKSHISELKD ECNLTMLGSS 240 STDLIPNIGS LLYSDPLFMQ DNSSIVKMLL DGEETKFKKS IQDFGTVENA LTTSSWDCDG 300 LAGSAGLVEV DCYWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-53 | 17 | 176 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00387.1_g00044.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482683.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9LJW3 | 1e-151 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A397Z6U6 | 0.0 | A0A397Z6U6_BRACM; Uncharacterized protein | ||||
STRING | Bo7g087220.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 1e-154 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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