PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00387.1_g00032.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 346aa MW: 37512.4 Da PI: 7.825

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00387.1_g00032.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.7	7.9e-35	53	110	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ Rsa1.0_00387.1_g00032.1 53 TVNYKECLKNHAAAIGGHALDGCGEFMPSPSSTpTDPTSLKCAACGCHRNFHRRDPDD 110 799***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.7E-29	54	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	54	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.3E-31	55	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.805	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.28E-17	195	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.8E-29	196	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.5E-25	207	264	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MLEVGAMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHHNHT ITTVNYKECL 60 KNHAAAIGGH ALDGCGEFMP SPSSTPTDPT SLKCAACGCH RNFHRRDPDD SSLTSPVPPP 120 SLPPSSATAA IEYQPHHRHH PPPPAPPLPR SPTSSSPPPI SSSYMLLALS GNNKPGGNSL 180 PFSDLNFAAA NNLSAHHHQQ HHTPGSRKRF RTKFSQHQKD KMHEFADRIG WKIQKRDEDE 240 VREFCRDVGV DKGVLKVWMH NNKNTFSTTR RELPFSGDTT VQKIDNGVAV SGGDNIVINN 300 NSNNNADDVG VHGGNGLEHE IHRGGGDGRF ESDSGGAAAN GSSSTS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MLEVGAMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHHNHT ITTVNYKECL  60
KNHAAAIGGH ALDGCGEFMP SPSSTPTDPT SLKCAACGCH RNFHRRDPDD SSLTSPVPPP  120
SLPPSSATAA IEYQPHHRHH PPPPAPPLPR SPTSSSPPPI SSSYMLLALS GNNKPGGNSL  180
PFSDLNFAAA NNLSAHHHQQ HHTPGSRKRF RTKFSQHQKD KMHEFADRIG WKIQKRDEDE  240
VREFCRDVGV DKGVLKVWMH NNKNTFSTTR RELPFSGDTT VQKIDNGVAV SGGDNIVINN  300
NSNNNADDVG VHGGNGLEHE IHRGGGDGRF ESDSGGAAAN GSSSTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-20	206	265	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00387.1_g00032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189594	0.0	AC189594.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013N10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478108.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LHF0	1e-119	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A3P6E3Y9	1e-161	A0A3P6E3Y9_BRAOL; Uncharacterized protein
STRING	Bra025363.1-P	1e-160	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-91	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]