PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00383.1_g00026.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 345aa MW: 37466.2 Da PI: 8.0993

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00383.1_g00026.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.8e-17	6	52	1	47
TSSS-HHHHHHHHH.HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvd.avkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde+l + +v+++G+++W++I++ ++ gR++k+c++rw + Rsa1.0_00383.1_g00026.1 6 KGPWSQEEDEQLRRmVVEKYGPRNWSAISKSIP-GRSGKSCRLRWCNQ 52 79********9835799**********.*********985 PP
2	Myb_DNA-binding	51	3.3e-16	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++ eEde ++ a +++G++ W+tIar ++ gRt++ +k++w++ Rsa1.0_00383.1_g00026.1 59 RRPFSSEEDETILSARAKFGNK-WATIARLLN-GRTDNAVKNHWNST 103 679*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.115	1	57	IPR017930	Myb domain
SuperFamily	SSF46689	9.36E-29	3	100	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-14	5	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	6	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-24	7	60	IPR009057	Homeodomain-like
CDD	cd00167	4.23E-15	8	51	No hit	No description
SMART	SM00717	5.2E-14	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-13	59	103	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.164	59	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-22	61	108	IPR009057	Homeodomain-like
CDD	cd00167	4.83E-10	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MADRVKGPWS QEEDEQLRRM VVEKYGPRNW SAISKSIPGR SGKSCRLRWC NQLSPEVERR 60 PFSSEEDETI LSARAKFGNK WATIARLLNG RTDNAVKNHW NSTLKRKFVA GGGGGGGGDC 120 DHVAKRRSVS SESSPPVDTE LYLISPESPT STIPSPPSPM PVSGGFTVVP SEEEDPATSL 180 SLSLSLPGAD DGKGSRNTGS SSNNALLFQR FESQMRIDSV EAAGRDEFMR VVQEMIKAEV 240 RSYMSEIQKD SGGFAVGGGG GGLYGTGKGG FRDSGLLPKG CMLVEARWLF GGFAVFISFA 300 GLLKESLLNR FAYPSDMIFT DLDPDCSRYV PKGFAFYPLK ITCSV

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MADRVKGPWS QEEDEQLRRM VVEKYGPRNW SAISKSIPGR SGKSCRLRWC NQLSPEVERR  60
PFSSEEDETI LSARAKFGNK WATIARLLNG RTDNAVKNHW NSTLKRKFVA GGGGGGGGDC  120
DHVAKRRSVS SESSPPVDTE LYLISPESPT STIPSPPSPM PVSGGFTVVP SEEEDPATSL  180
SLSLSLPGAD DGKGSRNTGS SSNNALLFQR FESQMRIDSV EAAGRDEFMR VVQEMIKAEV  240
RSYMSEIQKD SGGFAVGGGG GGLYGTGKGG FRDSGLLPKG CMLVEARWLF GGFAVFISFA  300
GLLKESLLNR FAYPSDMIFT DLDPDCSRYV PKGFAFYPLK ITCSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-39	5	107	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-39	5	107	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:17675404, ECO:0000269\|PubMed:24894996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00383.1_g00026.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269\|PubMed:15173595, ECO:0000269\|PubMed:17675404}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013707494.1	1e-128	transcription factor MYB44-like
Swissprot	Q9SN12	1e-109	MYB77_ARATH; Transcription factor MYB77
TrEMBL	A0A078GEJ4	1e-127	A0A078GEJ4_BRANA; BnaC07g31640D protein
STRING	Bra012910.1-P	1e-125	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13598	15	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-84	myb domain protein 77

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]