PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00373.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 393aa MW: 44249.5 Da PI: 6.2024

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00373.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.8e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG ekAtPkti+++m+++gLtl+h+kSHLQkYRl Rsa1.0_00373.1_g00009.1 45 KPRLKWTPDLHERFVEAVNQLGGGEKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.727	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-24	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MYYHNQHQGK SILSSSRMPI PTERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV 120 EENTPEADES QSESLSIGPQ PSMNLPISDA LQMQIAVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQAILEKAQ ETLGRQNLGP AGIEATKAQL SELVSKVSSE YPDASFLELQ NLHHQQMQTA 240 YPPPNSSLES CLTSSEGTQK AAPKMLENRL GLRTYLGDST SEQKEIMEEP FFHRMELTWA 300 EEEEGLRENN GTYLSTMEQR SSSSRRSPGR LSIGVGLQEH RGGGYTEERF NENGEDCKVE 360 TQARTDLDLN THDDETYITR RPKQFDLNGF SWS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MYYHNQHQGK SILSSSRMPI PTERHPFLRG NGPGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGEK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENTPEADES QSESLSIGPQ PSMNLPISDA LQMQIAVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQAILEKAQ ETLGRQNLGP AGIEATKAQL SELVSKVSSE YPDASFLELQ NLHHQQMQTA  240
YPPPNSSLES CLTSSEGTQK AAPKMLENRL GLRTYLGDST SEQKEIMEEP FFHRMELTWA  300
EEEEGLRENN GTYLSTMEQR SSSSRRSPGR LSIGVGLQEH RGGGYTEERF NENGEDCKVE  360
TQARTDLDLN THDDETYITR RPKQFDLNGF SWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-22	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00373.1_g00009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443809.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Refseq	XP_018443810.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A078HMA6	0.0	A0A078HMA6_BRANA; BnaA10g16590D protein
TrEMBL	M4CD64	0.0	M4CD64_BRARP; Uncharacterized protein
STRING	Bra002145.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]