PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00373.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 337aa MW: 38490.5 Da PI: 6.3517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00373.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.5e-55	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeel+++yLk+kv ++++++ ++ e+d++k+ePwdL+k++k ++ke+yfF++rd+ky+tg r+nrat+sgyWkat Rsa1.0_00373.1_g00006.1 21 MPPGFRFHPTDEELITCYLKEKVLDSRFTA-VAMGEADLNKCEPWDLQKRAKMGDKELYFFCQRDRKYPTGLRTNRATESGYWKAT 105 79***********************999.67***********99999***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle Rsa1.0_00373.1_g00006.1 106 GKDKEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148 ****9******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-62	18	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.19	21	172	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAVVVEEEVV LNHGGEELVD MPPGFRFHPT DEELITCYLK EKVLDSRFTA VAMGEADLNK 60 CEPWDLQKRA KMGDKELYFF CQRDRKYPTG LRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPATTTQ 180 QMTRIPLEDL TRMDSLDNID HLLDFSSLPP LMDPSFTGQP EQHNFKSTSP PTYDILSSPI 240 QPRHFNSSYQ SIFDHQGFGS GSGSLYNNNS NKEMIKMEHS FVSVSQETCL SSDVNAATTT 300 EVSSVPAMKQ EMSMMGMMNG SKSYDDLCDL RGILWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	15	174	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00373.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP641357	0.0	KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009120990.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FK44	0.0	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A397XLF4	0.0	A0A397XLF4_BRACM; Uncharacterized protein
TrEMBL	M4CD67	0.0	M4CD67_BRARP; Uncharacterized protein
STRING	Bra002148.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	0.0	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]