PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00363.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 345aa MW: 39079.6 Da PI: 5.0712

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00363.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	104.8	6.7e-33	37	132	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 l++r+w+e+De+++L+Gl+d++ +t +ps d+d+f++fv++si++k+sk+ql++K+r+L++Kf +++++++g++p f++ d++ Rsa1.0_00363.1_g00016.1 37 LIKRIWNEDDELSILKGLVDYRVNTRHDPSFDWDGFFRFVQGSIHVKFSKEQLFSKVRKLRRKFALHMERIDRGEDPLFTRLTDSQ 122 579********************************************************************************* PP DUF573 88 ifelskkiWg 97 +f++s++iWg Rsa1.0_00363.1_g00016.1 123 AFGYSNMIWG 132 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-26	39	132	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MATTKRLNCS DTCLPKSPSE DVSRKKKKKK NKSASPLIKR IWNEDDELSI LKGLVDYRVN 60 TRHDPSFDWD GFFRFVQGSI HVKFSKEQLF SKVRKLRRKF ALHMERIDRG EDPLFTRLTD 120 SQAFGYSNMI WGVYQPEVAA NDEKAQEEEA QGGGIEKSPG GETTQSCGDD EQMDNAVYVN 180 DNGDESSKLY GGNGTENVVQ ILRVILMNQE NGFRETGRVS NDEPVKDNGR VGNNEPVNEN 240 GAEEDAFDGK SLYEVGVDKT TDGKESHDDD ADELRVVEDA FETTILQGLS VWQRKLQLKK 300 LMMNLGTEKR KELSNEWKAL CSEETKLKIK KLRFTAKLVE AAYDG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MATTKRLNCS DTCLPKSPSE DVSRKKKKKK NKSASPLIKR IWNEDDELSI LKGLVDYRVN  60
TRHDPSFDWD GFFRFVQGSI HVKFSKEQLF SKVRKLRRKF ALHMERIDRG EDPLFTRLTD  120
SQAFGYSNMI WGVYQPEVAA NDEKAQEEEA QGGGIEKSPG GETTQSCGDD EQMDNAVYVN  180
DNGDESSKLY GGNGTENVVQ ILRVILMNQE NGFRETGRVS NDEPVKDNGR VGNNEPVNEN  240
GAEEDAFDGK SLYEVGVDKT TDGKESHDDD ADELRVVEDA FETTILQGLS VWQRKLQLKK  300
LMMNLGTEKR KELSNEWKAL CSEETKLKIK KLRFTAKLVE AAYDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	29	RKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00363.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486701.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q8VYD2	2e-75	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	A0A078GNW2	1e-157	A0A078GNW2_BRANA; BnaC06g12070D protein
TrEMBL	A0A0D3CSS7	1e-157	A0A0D3CSS7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FT81	1e-157	A0A3P6FT81_BRAOL; Uncharacterized protein
STRING	Bo6g057560.1	1e-157	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	7e-74	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]