PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00362.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 322aa    MW: 36633.9 Da    PI: 6.9269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00362.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-172875148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd +l +++  lG g+W++ ar+ g++Rt+k+c++rw++yl
  Rsa1.0_00362.1_g00014.1 28 RGPWTVEEDFKLSNYISTLGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                             89********************************************97 PP
2Myb_DNA-binding50.54.8e-1681124146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Rsa1.0_00362.1_g00014.1  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6732375IPR017930Myb domain
SuperFamilySSF466892.86E-3025122IPR009057Homeodomain-like
SMARTSM007175.1E-142777IPR001005SANT/Myb domain
PfamPF002494.8E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-212982IPR009057Homeodomain-like
CDDcd001678.24E-113075No hitNo description
PROSITE profilePS5129422.91776130IPR017930Myb domain
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PfamPF002498.0E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2283129IPR009057Homeodomain-like
CDDcd001673.60E-7101124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDGKRRLGIN KNMGDLQNNV DDEMDLRRGP WTVEEDFKLS NYISTLGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSTTGSA AKSCVATTTD  180
QLVITSYDEG ANNNNTNIDH LGLTSNPNGY VSNVSRETSS LKVSPGSGLT DYHMGSEVEK  240
VETSQNLVGP QIMSPSQNYL DDKSGLLNGV LAVMQEESYP NLFENMNGMI PSYSDSFWNI  300
GSDEDFWLLQ QQQQQLLNNG SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-252512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00362.1_g00014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756570.0KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481208.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-142MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A142BX590.0A0A142BX59_BRANA; MYB transcription factor 78-3
TrEMBLA0A3P5YXX90.0A0A3P5YXX9_BRACM; Uncharacterized protein
TrEMBLM4D0M30.0M4D0M3_BRARP; Uncharacterized protein
STRINGBra010021.1-P0.0(Brassica rapa)
STRINGBra010022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-133myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]