PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00354.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 566aa    MW: 62866.9 Da    PI: 6.9851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00354.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08262282526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C+ Gd+C +aHg
  Rsa1.0_00354.1_g00020.1 262 PCPEFRK-GSCPKGDSCEYAHG 282
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.21E-1333155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1433181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.004577107IPR002110Ankyrin repeat
PROSITE profilePS5029711.77177186IPR020683Ankyrin repeat-containing domain
PfamPF136379.0E-878130No hitNo description
CDDcd002041.20E-1179176No hitNo description
SMARTSM00248240112145IPR002110Ankyrin repeat
SMARTSM003566.3E-5257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976257284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-6262283IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4289321IPR000571Zinc finger, CCCH-type
SMARTSM0035628292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.681292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MCGSESNLCS SRPLTEAEYM RRKSEEGVAA AATCLLELAA CDDLPSFRRE IEENSIDINE  60
PGFWYCRRVG SKKMGFQERT PLMVAAMYGS IDVLTYIIST GNADVDRVSG DEKVTALHCA  120
VSACSVSIVQ VIKILLDAAS ASPNCVDANG NKPVDLMVRA SRFIPNQTRR AVELLLTGSS  180
VSLMEEQEEE EVKSVVSKYP ADASLPDINE GVYGTDEFRM FSFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYPYTC VPCPEFRKGS CPKGDSCEYA HGVFESWLHP GQYKTRLCKD  300
ETGCARRVCF FAHRRDELRP VNASTGSAMV SPQSPEMSVM SSPMGNNGVP LSPRNGGLWQ  360
NRVNSLTPPP LQLNGSRLKS SLSARDMDME MELRLRGLDG HRLGESVMSP SRYSQMNNYP  420
SSPVRQPPPQ RFESSAAMAA AVMNARSSAF AKRSLSFKPA PVAASNVSDW GSPNGKVEWG  480
MQREEMNKMR RSVSFGIHGN HNNNNVSRPV RDYSDEPDVS WVNSLVKDST QERDFGLNGA  540
AVRDEFKLPL WAEQMYIDHE KQQSVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00354.1_g00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459968.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_018459969.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM4CL950.0M4CL95_BRARP; Uncharacterized protein
STRINGBra004982.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein