PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00353.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 373aa    MW: 42601.1 Da    PI: 4.9932
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00353.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.4e-32161092102
                              HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
             HSF_DNA-bind   2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                              F +k ye+++d+ ++++isw  ng  nsfv++d++ f++++LpkyFkhsn++SFvRQLn+YgF+kv+ ++          eF+h++
  Rsa1.0_00353.1_g00014.1  16 FPRKCYEMVDDSCTDSIISWRGNGddNSFVISDTTLFSTQLLPKYFKHSNLSSFVRQLNIYGFRKVDADH---------YEFAHDW 92 
                              889******************766669*****************************************99.........78***** PP

                              XXXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                              F +g+k+ll+++ r+k+
  Rsa1.0_00353.1_g00014.1  93 FVRGRKDLLKNVIRRKN 109
                              ***********999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-329102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3011107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-4612107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2716107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVKSSEGVSS SSVAPFPRKC YEMVDDSCTD SIISWRGNGD DNSFVISDTT LFSTQLLPKY  60
FKHSNLSSFV RQLNIYGFRK VDADHYEFAH DWFVRGRKDL LKNVIRRKNV QSSSSEHQSK  120
SVSKKQESAS EICQEVYPEL WKEVDILKGD KKALAQELVK VRQYQEVTDT KMLHLKDRVQ  180
GMEESQQEML SFLVMVMQNP SLLVQLLQPK EKNWRKGEGG GGATILEEVT EEGESNSNGL  240
PVVTYQQRPS EGTAKSSSSD LNDFLRNADM LKFCLDENHV PLIIPDLYDD GAWEKLLLLS  300
HSKKKKNVKK GKDDETLEEK EGEPMELEKS RTLKLLQEEM ERADEFDFGQ LTPERSMNLE  360
ILTQQIALLA SNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-211110715120Heat shock factor protein 1
5d5u_B1e-21810721129Heat shock factor protein 1
5d5v_B1e-21810721129Heat shock factor protein 1
5d5v_D1e-21810721129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00353.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445736.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A078H6Z90.0A0A078H6Z9_BRANA; BnaC02g17710D protein
STRINGBra004272.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-164heat shock transcription factor A8