PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00352.1_g00008.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 913aa MW: 101196 Da PI: 4.8002

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00352.1_g00008.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.6	2.2e-27	619	669	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ Rsa1.0_00352.1_g00008.1 619 EKIIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 669 68899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	608	689	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-23	623	669	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.53E-25	804	899	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-24	812	895	No hit	No description
PROSITE profile	PS51745	26.684	814	897	IPR000270	PB1 domain
SMART	SM00666	1.4E-26	814	897	IPR000270	PB1 domain
Pfam	PF00564	3.3E-16	815	896	IPR000270	PB1 domain
CDD	cd06407	1.60E-44	815	896	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDGKSLKQT 60 EEAEAASTAM NDNSPFLCFG ENPSQDEETE RMNQEPFNQV ATGFDQAEKF LLDEAEVGRS 120 WWIAPRTSED PSSSVKERLL RAISGLEEAV PDKDFLVQIW VPFQQEGKNF LTTLAQPHLF 180 NQKYSSLAKY RHVSETYNFP ADEGSTEGGL PGRVFLQKFP EWTPDVRFFR SDEYPRIKEA 240 QKCDVRGSLA LPVFERCSGT CLGVVEVVTT TQKMNYRPEL ENICKALEAV DLRSSSNLKP 300 SSNEVYDDFY YAALPEISDF LASVCRKYDL PLALSWAPCT RQGKGGSRHS DENFSQCVST 360 IDSACFVLDE ESKYFLEACF EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKCNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV 480 IDKDLELEVV LPVREDMVLS ENQLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL 540 SWEYQNEDPK DEFKLSSGWD NSQLEPAPNN IPSEAEQFQH GSTSGLRVDA GPSTESASTG 600 GGNKLGSRRP GEKRRTKTEK IIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR 660 WPSRKIKKVG HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEQL 720 HHLNVPNGNG GLAEDKPAQM SPSSSCSGSN TNTPNTLHVT EDANGVLKKA HSEAELQNGN 780 QEETKCLART QSHNIFKEPP LPGRSNMSSR DGGGIKVKAT FGEAIIRFTL LPSWGYRELQ 840 QEIARRFNID DVSWFDLKYL DDDEEWVLLT CEADLEECID IYRTSQSQTI KISLHDPFQV 900 KLGGSFGSSG PSK

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDGKSLKQT  60
EEAEAASTAM NDNSPFLCFG ENPSQDEETE RMNQEPFNQV ATGFDQAEKF LLDEAEVGRS  120
WWIAPRTSED PSSSVKERLL RAISGLEEAV PDKDFLVQIW VPFQQEGKNF LTTLAQPHLF  180
NQKYSSLAKY RHVSETYNFP ADEGSTEGGL PGRVFLQKFP EWTPDVRFFR SDEYPRIKEA  240
QKCDVRGSLA LPVFERCSGT CLGVVEVVTT TQKMNYRPEL ENICKALEAV DLRSSSNLKP  300
SSNEVYDDFY YAALPEISDF LASVCRKYDL PLALSWAPCT RQGKGGSRHS DENFSQCVST  360
IDSACFVLDE ESKYFLEACF EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA  420
KISGLHAALA VPLKSKCNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV  480
IDKDLELEVV LPVREDMVLS ENQLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL  540
SWEYQNEDPK DEFKLSSGWD NSQLEPAPNN IPSEAEQFQH GSTSGLRVDA GPSTESASTG  600
GGNKLGSRRP GEKRRTKTEK IIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR  660
WPSRKIKKVG HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEQL  720
HHLNVPNGNG GLAEDKPAQM SPSSSCSGSN TNTPNTLHVT EDANGVLKKA HSEAELQNGN  780
QEETKCLART QSHNIFKEPP LPGRSNMSSR DGGGIKVKAT FGEAIIRFTL LPSWGYRELQ  840
QEIARRFNID DVSWFDLKYL DDDEEWVLLT CEADLEECID IYRTSQSQTI KISLHDPFQV  900
KLGGSFGSSG PSK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00352.1_g00008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440658.1	0.0	PREDICTED: protein NLP1 isoform X2
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A3N6PMV6	0.0	A0A3N6PMV6_BRACR; Uncharacterized protein
STRING	Bra002025.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]