PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00351.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 356aa    MW: 39747.3 Da    PI: 8.7348
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00351.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.3e-40126202177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +CqvegC+ dls+ak+yhr+h++C  hsk+p+v+vsg+e+rfCqqCsrfh lsefD +krsCrrrL++hn+rrrk++
  Rsa1.0_00351.1_g00013.1 126 RCQVEGCDLDLSSAKDYHRKHRICGNHSKSPKVVVSGEERRFCQQCSRFHCLSEFDGKKRSCRRRLSDHNARRRKPN 202
                              6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-33120188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.06124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37125205IPR004333Transcription factor, SBP-box
PfamPF031103.1E-31127200IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDWEADEFDC SFTTAGLAHA FSKRSKSTSI SSSSPEARTL NFTSEELGSS EEFAKGMDTS  60
PSLDLSFGSG EPVLGLKLGK RTYFEDFWEV ENAARGSALP VSLVSSSSAS PVKRTKSVSQ  120
KLQTPRCQVE GCDLDLSSAK DYHRKHRICG NHSKSPKVVV SGEERRFCQQ CSRFHCLSEF  180
DGKKRSCRRR LSDHNARRRK PNPGRTYAGK EQMDFVWNRF ALIHPRSEEK FLWPNPKPIP  240
SRGLIQQPAK TRADLFSKEK VTISSSMGAS QDLDGALSLL SNSTSWVPSD QPTQFSLDHH  300
PTTNLQPMAH RSVTQLSTVS DYWQPDPPAV EGPTGLHRNG VGQFTENYFG LNQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-241272001184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182199KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00351.1_g00013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114006.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_009114007.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018510423.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078H6340.0A0A078H634_BRANA; BnaA09g16340D protein
TrEMBLM4EFB60.0M4EFB6_BRARP; Uncharacterized protein
STRINGBra027478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2