PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00350.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 401aa    MW: 44351.4 Da    PI: 6.7206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00350.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.81.6e-109393962374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfse 86 
                               +lLl+cAe v++++l++a+ lL+++se++sp g++ +R++ayf +AL+ar+++   s+ ++ l+ ++   ++  + +aal++f+ 
  Rsa1.0_00350.1_g00007.1  39 LSLLLQCAEYVATNHLHEASILLSEISETCSPFGSSPERVVAYFSQALQARVVStYLSRACSHLSNNPPI-HHPHKIFAALQTFNS 123
                              689***************************************************5556666666555544.4588889999***** PP

                     GRAS  87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                              +sP++kfsh+taNqaI +a++ge + vHiiD+d++qGlQWp L++ LasRp++  s+RiTg+g+    s++ l +tg+rLa+fA++
  Rsa1.0_00350.1_g00007.1 124 LSPLIKFSHFTANQAIFQALNGEeDSVHIIDLDVMQGLQWPGLFHILASRPRKLRSIRITGFGP----SSDILASTGRRLADFAAS 205
                              **********************989***************************************....9***************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFle 255
                              l +pfef++ v+ ++ + ++++L ++pgEa++V+++   hrl+d ++s  +     ++++++l+P +v++veqe+++  +++ Fl 
  Rsa1.0_00350.1_g00007.1 206 LSLPFEFHP-VVGKIGKTDPSRLGTRPGEAVVVHWMQ--HRLYDVTGSDLD----AVEVIRGLRPSLVTMVEQELSCddGGGCFLG 284
                              *********.7999**********************9..****99999998....9******************666437889*** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              rf+eal+yysalfd+l  +l++es er  vE+ +l+ ei+n+v  +++        +++Wre l+++GF+pv+l+ + a+qa lll
  Rsa1.0_00350.1_g00007.1 285 RFVEALHYYSALFDALGDGLGEESGERFAVEQIVLATEIRNIVGEKKRG-------MMRWREELSRVGFRPVSLRGNPATQAGLLL 363
                              *******************************************877765.......99**************************** PP

                     GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               + +++gy++ ee+g+l lgWkd +L+++SaW+
  Rsa1.0_00350.1_g00007.1 364 GMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 396
                              ********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.68712376IPR005202Transcription factor GRAS
PfamPF035145.7E-10739396IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MASKRVHRDH TDLSTVKRHK DLDFPENTTT TTPDAINLLS LLLQCAEYVA TNHLHEASIL  60
LSEISETCSP FGSSPERVVA YFSQALQARV VSTYLSRACS HLSNNPPIHH PHKIFAALQT  120
FNSLSPLIKF SHFTANQAIF QALNGEEDSV HIIDLDVMQG LQWPGLFHIL ASRPRKLRSI  180
RITGFGPSSD ILASTGRRLA DFAASLSLPF EFHPVVGKIG KTDPSRLGTR PGEAVVVHWM  240
QHRLYDVTGS DLDAVEVIRG LRPSLVTMVE QELSCDDGGG CFLGRFVEAL HYYSALFDAL  300
GDGLGEESGE RFAVEQIVLA TEIRNIVGEK KRGMMRWREE LSRVGFRPVS LRGNPATQAG  360
LLLGMLPWNG YTLVEENGTL RLGWKDLSLL TASAWQSQPS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1374439524377Protein SCARECROW
5b3h_D1e-1374439524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00350.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477714.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A397ZNW70.0A0A397ZNW7_BRACM; Uncharacterized protein
STRINGBo4g143710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]