PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00344.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 293aa MW: 32391.6 Da PI: 10.8015 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.9 | 7.4e-15 | 26 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr.t 72 +W+++ + +Li+a ++ l+rg l++++W+ev++++ ++ + +r+ +qCk++++ l+k+yk +k+++++ Rsa1.0_00344.1_g00002.1 26 CWSEEATFTLIQAWGSRYVGLSRGGLRQNHWQEVANAVngrhfntgrnvsaAKSQPRRTDVQCKNRIDTLKKKYKVEKARASGAgG 111 7*************************************************989999***********************9998856 PP trihelix 73 sessstcpyfdqle 86 ++ +s++p+f++l+ Rsa1.0_00344.1_g00002.1 112 AGYVSSWPFFSDLD 125 99999*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.3E-24 | 24 | 127 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MKHAVNGSFS PGSSRPSPST LPREDCWSEE ATFTLIQAWG SRYVGLSRGG LRQNHWQEVA 60 NAVNGRHFNT GRNVSAAKSQ PRRTDVQCKN RIDTLKKKYK VEKARASGAG GAGYVSSWPF 120 FSDLDDLLGE TFPASSSTPS LPMAIVPVPV APRSAIPRRP APSPAIMRIG GENLLGIRGN 180 LNAFAAAAAA AAYSPAYGDD SDGSRSRSSG GGGKRRKREE KRGYREVAEA IERLGEIYER 240 VEERKRKEMV ELEKQRMRFA KELECHRMQL FTEMRLRLHK LRRTKGPTSS GET |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00344.1_g00002.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189221 | 0.0 | AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488434.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A3N6RMC0 | 1e-163 | A0A3N6RMC0_BRACR; Uncharacterized protein | ||||
STRING | Bra007407.1-P | 1e-162 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58630.1 | 4e-90 | sequence-specific DNA binding transcription factors |