PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00340.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 36263.4 Da PI: 6.1761 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.8 | 5.1e-29 | 159 | 219 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+rs++dp+v+e+tY+g H+++ Rsa1.0_00340.1_g00007.1 159 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSNSDPTVFEVTYRGAHTCR 219 8***************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-27 | 156 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-25 | 156 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-38 | 158 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-26 | 159 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.194 | 159 | 216 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEGKKDMLTW EQNTLLSELT IGLEAARKLH AQLGGSSSSS SSLTSFSSPA TETSKILLKQ 60 ILSSYEKSLA IVNWSSSPPV QLILKEDAVA PVTHSGVIPE SPASINGSPR SEEFIDGGGS 120 NDTHRQDHFF NSKKRKMLPK WTEKVRINPE RGLEGPHQDD VYSWRKYGQK DILGAKFPRS 180 YYRCTHRSTQ NCWATKQVQR SNSDPTVFEV TYRGAHTCRQ GSAAPPPPAS PEKQDTRTKQ 240 PIAQTPNELL ESLKTSLTVR TEGLDDGEDV FSFPNTPPFY DYGTTNDYFG GLMESSPIFN 300 AVDWFNPTVD INPEFPTFLP DSIYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 159 | 219 | 9 | 69 | OsWRKY45 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00340.1_g00007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430061 | 0.0 | KF430061.1 Brassica rapa WRKY transcription factor 53 (WRKY53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018484327.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 1e-153 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | M4DRX2 | 0.0 | M4DRX2_BRARP; Uncharacterized protein | ||||
STRING | Bra019265.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-149 | WRKY family protein |