PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00339.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 126aa MW: 14120.7 Da PI: 10.8247 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 130.5 | 4.5e-41 | 3 | 68 | 3 | 68 |
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavP 68 ++k e+kGlnPGlivllv+ggll++flvgn+ily+yaqknlP rkkkPvskkk+k+eklkqGv+vP Rsa1.0_00339.1_g00013.1 3 QGKLESKGLNPGLIVLLVIGGLLVTFLVGNFILYTYAQKNLPQRKKKPVSKKKMKKEKLKQGVQVP 68 6789*************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.1E-36 | 6 | 68 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MRQGKLESKG LNPGLIVLLV IGGLLVTFLV GNFILYTYAQ KNLPQRKKKP VSKKKMKKEK 60 LKQGVQVPLH PSDGPSDLVI SFVMLWLSMK PRGLLGSSSE ETPRDVLRFE NQMNLNGPRE 120 ETQSGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00339.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884751.2 | 1e-20 | DNA-binding protein S1FA3 | ||||
Refseq | XP_006298914.1 | 1e-20 | DNA-binding protein S1FA3 | ||||
Refseq | XP_009146906.1 | 1e-20 | PREDICTED: DNA-binding protein S1FA3 | ||||
Refseq | XP_022575570.1 | 1e-20 | DNA-binding protein S1FA3 | ||||
Swissprot | Q42337 | 8e-16 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A1J3J4X3 | 3e-22 | A0A1J3J4X3_NOCCA; DNA-binding protein S1FA2 | ||||
STRING | Cagra.2515s0064.1.p | 8e-35 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |