PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00329.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 907aa    MW: 100135 Da    PI: 7.5639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00329.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-10649674126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C++++rtG C yG++C+++H+
  Rsa1.0_00329.1_g00010.1 649 PGERDCQYYLRTGLCGYGSSCRYNHP 674
                              5789*********************9 PP
2zf-CCCH35.22e-11694718327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f++tG CkyG++Ck++H++
  Rsa1.0_00329.1_g00010.1 694 QPDCEYFLKTGACKYGSTCKYHHPK 718
                              789********************96 PP
3zf-CCCH36.86.4e-12738763227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+f++rtGtC++G +C+F+H++
  Rsa1.0_00329.1_g00010.1 738 GEKPCSFYLRTGTCRFGVSCRFHHPQ 763
                              689*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5094228.17928165IPR013809ENTH domain
Gene3DG3DSA:1.25.40.902.0E-3034158IPR008942ENTH/VHS
SMARTSM002733.7E-4534165IPR013809ENTH domain
PfamPF076511.2E-8235320IPR011417AP180 N-terminal homology (ANTH) domain
SuperFamilySSF484641.42E-2436158IPR008942ENTH/VHS
CDDcd035642.73E-3136158No hitNo description
SuperFamilySSF890092.43E-33186317No hitNo description
Gene3DG3DSA:1.20.58.1502.1E-27198321IPR014712Phosphoinositide-binding clathrin adaptor, domain 2
PROSITE profilePS5010314.718648676IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5648675IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8650674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5651675IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4654673IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6691718IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896691719IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9694718IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5696719IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4697717IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6735765IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845736764IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-6736763IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9738763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5740763IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.892828856IPR000571Zinc finger, CCCH-type
SMARTSM003560.56829855IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048268Biological Processclathrin coat assembly
GO:0030136Cellular Componentclathrin-coated vesicle
GO:0005545Molecular Function1-phosphatidylinositol binding
GO:0030276Molecular Functionclathrin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MPSKLKKAIG AVKDQTSISL AKVTNRANRG GDLTTLEVAI LKATSHDEDV PIDDRLVSDI  60
LAIISSKKSH AAACAAAIGR RIGRTRNWIV ALKSLVLVLR IFQDGDPYFP REVLHVMKRG  120
AKILNLSTFR DDSNSRPWDY SAYVRTFALY LDERLDCFLT GKLQRRYTNN KTGIRSRFNP  180
KTRNKTDEPA VRDMKPAMLL DKITYWQRLL DRAIATRPTG DAKANRLVKT SLYAVLQESF  240
DLYRDISDGL ALLLDSFFHL PYKSCVHAFQ ASVRASKQFE ELNKFYDLCK SNGVGRTSEY  300
PSVQKISLEL LETLQEFLKD QSSFPGNNAG MYPSPNSLLL PPPPSSTVSS SLSERCCSDY  360
GSFRSASLED TGTSSPPMSC HSEPYGGGRE DPNGNSFDTV STKSLPNTPS VSSASSIDDK  420
EKKKKKKEKT KKQEEAKVEG FDPWEALMLR DEPRKNIETI PEEASTSEVQ RESGNWLLAL  480
EETVTTQVHD DDTNSMAIVP FGLDDPIPAF QATATDQYNP FLVESAAPLA KVGPTVELMS  540
TTFNALAVTD FQGNVPDDFE PSTAPTFKAT GSLPDKCEPF ATFESFGFEE SVLENGGGGY  600
GLVPGKEYRE GVQGSAVSIQ SSDKIEDAFK KMKVDEKKVL RSNAYPVRPG ERDCQYYLRT  660
GLCGYGSSCR YNHPTPLPQG IMYHNEGLPE RIGQPDCEYF LKTGACKYGS TCKYHHPKDR  720
NGAEPVLFNV LSLPMRQGEK PCSFYLRTGT CRFGVSCRFH HPQPDNGGHS TAAYGTSSFP  780
SAGVHYAGGL TMMSAYGALT RPQLPQSYVP LMVSPSQGLL APQSWATYMG QPACGNVKSY  840
GFCKFGPNCN LDHSMLPYPG LTIPYVSPVS SNYQRITPSP SRSGSKTNDK PDVKKDMLET  900
EKPDDDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422431KKKKKEKTKK
Functional Description ? help Back to Top
Source Description
UniProtAdaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Binding of AP180 to clathrin triskelia promotes their assembly into 70-90 nm coats cages. {ECO:0000269|PubMed:15054111}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00329.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448184.10.0PREDICTED: clathrin coat assembly protein AP180-like
SwissprotQ9ZVN60.0AP180_ARATH; Clathrin coat assembly protein AP180
TrEMBLA0A3P6F7S90.0A0A3P6F7S9_BRAOL; Uncharacterized protein
STRINGBo8g004370.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-133C3H family protein
Publications ? help Back to Top
  1. Barth M,Holstein SE
    Identification and functional characterization of Arabidopsis AP180, a binding partner of plant alphaC-adaptin.
    J. Cell. Sci., 2004. 117(Pt 10): p. 2051-62
    [PMID:15054111]