PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00327.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 221aa    MW: 24469.4 Da    PI: 6.9499
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00327.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.81.9e-2083117135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Rsa1.0_00327.1_g00013.1  83 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 117
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-1977129IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.91677113IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-1380118No hitNo description
Gene3DG3DSA:3.30.50.104.4E-1781117IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-1482114No hitNo description
PROSITE patternPS00344083108IPR000679Zinc finger, GATA-type
PfamPF003204.7E-1883117IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMGFSMFFSS ENEVVHHSSP YASVDCTLSL GTPSTRLYND EDDRRFSSHT SDNMSNSLGS  60
WDFLHGGKKG GGGGGNNLLA RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAS  120
TARNSTSGGG STAAGVPATD HYGGANYYYN NNNNNHYDSS SPWIHHQHQN THRVPYYSPA  180
NNEYSFADDV RDDNHDVTTD PFLSWRLNVA DRASLVHDFT M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00327.1_g00013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480826.11e-165PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-105GAT19_ARATH; GATA transcription factor 19
TrEMBLV4LS541e-119V4LS54_EUTSA; Uncharacterized protein
STRINGXP_006411982.11e-120(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-90GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]