PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00325.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 345aa    MW: 38516.9 Da    PI: 9.5634
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00325.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.5e-1262110155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a  +++g
  Rsa1.0_00325.1_g00002.1  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAVYRFRG 110
                              89****9888.8*********3.....5**********99***********9998 PP
2B3103.11.5e-32189292199
                              EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              f+k+ tpsdv+k++rlv+pk++ae+h     ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v 
  Rsa1.0_00325.1_g00002.1 189 FEKAVTPSDVGKLNRLVIPKHHAEKHfplppSNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVS 274
                              89*************************9999888889************************************************* PP

                              EEE-SSSEE..EEEEE-S CS
                       B3  82 Fkldgrsefelvvkvfrk 99 
                              F++++ ++++l++++ ++
  Rsa1.0_00325.1_g00002.1 275 FSRSDGQDQQLYIGWKSR 292
                              **9877999999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-762110IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1662118IPR016177DNA-binding domain
CDDcd000183.09E-2562120No hitNo description
Gene3DG3DSA:3.30.730.106.3E-2063119IPR001471AP2/ERF domain
SMARTSM003803.1E-2863124IPR001471AP2/ERF domain
PROSITE profilePS5103220.25763118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-41181295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-32187295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-28188280No hitNo description
PfamPF023623.2E-29189292IPR003340B3 DNA binding domain
SMARTSM010193.6E-26189293IPR003340B3 DNA binding domain
PROSITE profilePS5086314.438189293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEVSSVDEST TSTGSICETP AITPAVTSVK SSVNLHRMGS GSSVVLDSEN GAEAESRKLP  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARS YDVAVYRFRG RDAVTNFKEA  120
RLDEGEVEFL NSHSKAEIVD MLRKHTYSEE LEQSKRRRNG NGNTGRTLTS SVNGDGVSTT  180
EFRSAEALFE KAVTPSDVGK LNRLVIPKHH AEKHFPLPPS NVSVKGVLLN FEDVTGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGPDVETG  300
RVLRLFGVNI SPESSRNDVV GNKRVNDTEM LSLVCSKKQR IFHAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-7418529910124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00325.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530750.0AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442582.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
RefseqXP_018442711.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A3P5YPI20.0A0A3P5YPI2_BRACM; Uncharacterized protein
TrEMBLM4DTH80.0M4DTH8_BRARP; Uncharacterized protein
STRINGBra019821.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]