PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00323.1_g00027.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 449aa    MW: 50230.4 Da    PI: 4.6824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00323.1_g00027.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07377432147
                              TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                              r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
  Rsa1.0_00323.1_g00027.1 377 RLLWTPEEEYMLKVGVEKFAAEakknmPWRKILEMGQkvfhETRTPTDLKDKWRNM 432
                              677******************9***********9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd154890.001878127No hitNo description
PROSITE profilePS500907.41372433IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-8373438IPR009057Homeodomain-like
SuperFamilySSF466891.79E-9375434IPR009057Homeodomain-like
PfamPF002499.6E-6379432IPR001005SANT/Myb domain
CDDcd116605.27E-10380433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTTRSKSLPI RSSRDPYLSL PEEANQRDGT GKGIESGDDA DVEIVTDTFD GKKKRRHCLG  60
TSGTDRGGGG GGSHREACCI VCEISDESVS KCCGADCLLW FHEECLNAEF GSGCGCGGGE  120
DLYCPYCWFR ILAVKSVGLK EKAVEADMAV FKYLDEEMEN RGESVPKEGR EDSVDTTDIV  180
SDQELEGERQ RHIDESRGGE EDMELIEEND QPVDNFEVHT DKSQDMNVDK AVDDNEKAAA  240
ATENFQDTED EETAGDRRTK ANAGGAGKER DFSPFLSVQE SFSGKEQDQV QQSEKRRRKR  300
RLILNAFDSD VSSNGSTNEP NGEDAAEKMT SLALVVTSPS GRMTKNQQRE DSRTTKVDNS  360
KTTVRDIPIF KMEHKRRLLW TPEEEYMLKV GVEKFAAEAK KNMPWRKILE MGQKVFHETR  420
TPTDLKDKWR NMTGARQKNK QDSTSVSCM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KKKRR
2293301EKRRRKRRL
3294300KRRRKRR
4294301KRRRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00323.1_g00027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893051e-101AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454377.10.0PREDICTED: uncharacterized protein LOC108825563
TrEMBLA0A0D3E0T00.0A0A0D3E0T0_BRAOL; Uncharacterized protein
STRINGBo9g009350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-06telomere repeat binding factor 3