PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00322.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 149aa    MW: 16858.6 Da    PI: 7.5002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00322.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-055173123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Rsa1.0_00322.1_g00007.1 51 FSCNYCQRKFYSSQALGGHQNAH 73
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-64878No hitNo description
PROSITE profilePS5015711.0945178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPSYKNHP LNLELVLDPS SMSSSSSSST NSSCSEQPRV FSCNYCQRKF  60
YSSQALGGHQ NAHKLERTLA KKSRELFRSS TTVDVDQPYP FYGRFELYGR GYEGFVESGG  120
PRDYSGRRVP ESGIDQDQEM SHLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00322.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-130AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-130L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026881e-130CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475343.11e-106PREDICTED: zinc finger protein 2
SwissprotQ392615e-84ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A078FFX04e-89A0A078FFX0_BRANA; BnaC03g12900D protein
TrEMBLA0A0D3B2Z74e-89A0A0D3B2Z7_BRAOL; Uncharacterized protein
TrEMBLA0A397ZTX31e-88A0A397ZTX3_BRACM; Uncharacterized protein
TrEMBLA0A3P6A5504e-89A0A3P6A550_BRACM; Uncharacterized protein
TrEMBLA0A3P6AJV14e-89A0A3P6AJV1_BRAOL; Uncharacterized protein
TrEMBLM4CRH44e-89M4CRH4_BRARP; Uncharacterized protein
STRINGBra006815.1-P6e-90(Brassica rapa)
STRINGBo3g019270.16e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-83zinc finger protein 2