PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00321.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 364aa MW: 40985.1 Da PI: 6.1206

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00321.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.8e-32	209	263	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGG e+A Pk++l++mkv+gLt++hvkSHLQkYR+ Rsa1.0_00321.1_g00005.1 209 KGRVRWTPELHEAFVEAVNQLGGMENAKPKAVLKHMKVEGLTIYHVKSHLQKYRT 263 569***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.328	206	266	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	208	263	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-30	208	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-23	209	263	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-10	211	262	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-19	294	339	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
METRPFRSTR RELSNLAHTS SVPSPSVEAV DISFSSERNQ FMERPPYHLL SDDGGAAVGH 60 NNIYSNDHHN HPSMMSHIGS SSDIPFISNI LDWEPASIPV DLFGFPLVIP IRMEEEEDGG 120 ILTSDNDIIP RQSDLAELIT DDENPLMSTL WNDLFLDTSS TSAASKVREP TLQSQIQQPR 180 VVLHQTSPIA KTDSNNSFTS NNTAAAAAKG RVRWTPELHE AFVEAVNQLG GMENAKPKAV 240 LKHMKVEGLT IYHVKSHLQK YRTARHIPEP SQGSLETKLT PREHVTSLDT KGGMYITEAL 300 RIQMEVQKQL HEQLEIQRKM QLQIEKQGKA LLMMIEKQNL GFGKPEKEEE EADSRRSKRP 360 RNNE

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

METRPFRSTR RELSNLAHTS SVPSPSVEAV DISFSSERNQ FMERPPYHLL SDDGGAAVGH  60
NNIYSNDHHN HPSMMSHIGS SSDIPFISNI LDWEPASIPV DLFGFPLVIP IRMEEEEDGG  120
ILTSDNDIIP RQSDLAELIT DDENPLMSTL WNDLFLDTSS TSAASKVREP TLQSQIQQPR  180
VVLHQTSPIA KTDSNNSFTS NNTAAAAAKG RVRWTPELHE AFVEAVNQLG GMENAKPKAV  240
LKHMKVEGLT IYHVKSHLQK YRTARHIPEP SQGSLETKLT PREHVTSLDT KGGMYITEAL  300
RIQMEVQKQL HEQLEIQRKM QLQIEKQGKA LLMMIEKQNL GFGKPEKEEE EADSRRSKRP  360
RNNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	208	266	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00321.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438440.1	0.0	PREDICTED: myb family transcription factor PHL4
Swissprot	Q8GXC2	1e-104	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	M4F5W3	0.0	M4F5W3_BRARP; Uncharacterized protein
STRING	Bra036469.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-105	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]