PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00321.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40985.1 Da PI: 6.1206 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 209 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGG e+A Pk++l++mkv+gLt++hvkSHLQkYR+ Rsa1.0_00321.1_g00005.1 209 KGRVRWTPELHEAFVEAVNQLGGMENAKPKAVLKHMKVEGLTIYHVKSHLQKYRT 263 569***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.328 | 206 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 208 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-30 | 208 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-23 | 209 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-10 | 211 | 262 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.5E-19 | 294 | 339 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
METRPFRSTR RELSNLAHTS SVPSPSVEAV DISFSSERNQ FMERPPYHLL SDDGGAAVGH 60 NNIYSNDHHN HPSMMSHIGS SSDIPFISNI LDWEPASIPV DLFGFPLVIP IRMEEEEDGG 120 ILTSDNDIIP RQSDLAELIT DDENPLMSTL WNDLFLDTSS TSAASKVREP TLQSQIQQPR 180 VVLHQTSPIA KTDSNNSFTS NNTAAAAAKG RVRWTPELHE AFVEAVNQLG GMENAKPKAV 240 LKHMKVEGLT IYHVKSHLQK YRTARHIPEP SQGSLETKLT PREHVTSLDT KGGMYITEAL 300 RIQMEVQKQL HEQLEIQRKM QLQIEKQGKA LLMMIEKQNL GFGKPEKEEE EADSRRSKRP 360 RNNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-26 | 208 | 266 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00111 | ampDAP | Transfer from AT2G20400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00321.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438440.1 | 0.0 | PREDICTED: myb family transcription factor PHL4 | ||||
Swissprot | Q8GXC2 | 1e-104 | PHL4_ARATH; Myb family transcription factor PHL4 | ||||
TrEMBL | M4F5W3 | 0.0 | M4F5W3_BRARP; Uncharacterized protein | ||||
STRING | Bra036469.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20400.1 | 1e-105 | G2-like family protein |
Publications ? help Back to Top | |||
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