PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00314.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 431aa    MW: 48140.4 Da    PI: 5.9346
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00314.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.11.3e-30232286155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr+rWt eLH++F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Rsa1.0_00314.1_g00008.1 232 KPRMRWTAELHDSFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 286
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.035229289IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-28230287IPR009057Homeodomain-like
SuperFamilySSF466893.23E-16231287IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-24232287IPR006447Myb domain, plants
PfamPF002493.4E-7234285IPR001005SANT/Myb domain
PfamPF143792.5E-22323370IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MNRHRLVSTS QACSSSLSPP VHNFLNVQPE NPKSPFIRSH SPDSPGQLWP PKNSSQGTFS  60
RSSTFCTNLY VSSSSSSEAQ KHLGNTLPFL PDPSSNGQRA SAVEESARSP SIFSEDLSNA  120
FDGDNVRDFF NLSGDASSDR GFHDLDCSND SYCLSDQMEL QFLSDELELA ITDRSETPRL  180
DEIYETPLPS LSNPVTGLSQ SQRCVVTGAV TIEAVSSHPS PGSAAAAASN HKPRMRWTAE  240
LHDSFLKSVD KLEGPEKATP KAVLKLMNVE GLTIYHVKSH LQKYRLAKHI PEKKEAEKRN  300
VNTEEKKLAL SNSEADERKK GAMQLTEALR MQMEVQKQLH EQLEVQRVLQ LRIEEHAKYL  360
EKMLEEQRKT GMLMSSSSSS QTSDCQKNMS KNEESLPQTK NIASETEEDK CESPQKRRRV  420
ENNTESEDPE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-21232289259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415419KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00314.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485878.10.0PREDICTED: myb family transcription factor PHL6-like isoform X1
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A398A7870.0A0A398A787_BRACM; Uncharacterized protein
STRINGBo3g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]