PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00301.1_g00043.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 607aa MW: 65995.7 Da PI: 6.4111

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00301.1_g00043.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	7.2e-30	174	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ Rsa1.0_00301.1_g00043.1 174 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 233 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-31	159	235	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	167	235	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	169	235	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	174	234	IPR003657	WRKY domain
Pfam	PF03106	7.7E-27	175	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MSEVKKENEK LKRMLKRIES DYKSLKLRFF DVFQQEPSNK PTQDQNVVDL RTDLSSSDQE 60 GNLVSLSLGR RSSSPSDNTS NKEEKVDVIT KVVNSDEELT KAGLTLGFNN SNDREQNESL 120 SIVNSSEEAS KVTGKRSSPA PPDSGGDADG EAGQQNNVKR ARVCVRARCD TPTMNDGCQW 180 RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT 240 MASTTSAAAS MLLSCSSSSS AAKMIGNNLY DSSRFINNNN SKSFYAPTLH SPLHPTVTLD 300 LTTPQHYTST SLPSLNFNKL SNSFQRFPST SLNFSSSSSY TPYPYNNVQF GPSNLGKTVQ 360 NSQSLTETLT KALTSDPSFH SVVAAAISSM VGSNGEQQIV GPRHPNSNSI HQTAATNDIK 420 GRGGYFSSLL ASNIIANNQT GAFLDQPSSQ LPPLSMFKRP SSSSTTGSFV NKDEKSLSAY 480 LLNFDEEKLL DGSDSMARVS VLLCLVLLVT LGVVVSFSFA HGTETTQSTL QHQESSKTAT 540 TLDHKSEHKV QGGQQVMGGQ GQHDHKKKGD HTDDDTDTDD DHTDDDTDDD TDDDDDDKAK 600 KKTVKAL

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MSEVKKENEK LKRMLKRIES DYKSLKLRFF DVFQQEPSNK PTQDQNVVDL RTDLSSSDQE  60
GNLVSLSLGR RSSSPSDNTS NKEEKVDVIT KVVNSDEELT KAGLTLGFNN SNDREQNESL  120
SIVNSSEEAS KVTGKRSSPA PPDSGGDADG EAGQQNNVKR ARVCVRARCD TPTMNDGCQW  180
RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT  240
MASTTSAAAS MLLSCSSSSS AAKMIGNNLY DSSRFINNNN SKSFYAPTLH SPLHPTVTLD  300
LTTPQHYTST SLPSLNFNKL SNSFQRFPST SLNFSSSSSY TPYPYNNVQF GPSNLGKTVQ  360
NSQSLTETLT KALTSDPSFH SVVAAAISSM VGSNGEQQIV GPRHPNSNSI HQTAATNDIK  420
GRGGYFSSLL ASNIIANNQT GAFLDQPSSQ LPPLSMFKRP SSSSTTGSFV NKDEKSLSAY  480
LLNFDEEKLL DGSDSMARVS VLLCLVLLVT LGVVVSFSFA HGTETTQSTL QHQESSKTAT  540
TLDHKSEHKV QGGQQVMGGQ GQHDHKKKGD HTDDDTDTDD DHTDDDTDDD TDDDDDDKAK  600
KKTVKAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	161	235	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00301.1_g00043.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189232	0.0	AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659902.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	M4E402	0.0	M4E402_BRARP; Uncharacterized protein
STRING	Bra023505.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72