PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00293.1_g00033.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 576aa    MW: 64761.8 Da    PI: 5.9916
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00293.1_g00033.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR216.6e-073944171741
                      TCR  17 YCeCfaagkkCseeCkCedCkNkee 41 
                              YC Cfa+g++C+  C+C +C+N+ e
  Rsa1.0_00293.1_g00033.1 394 YCGCFASGSYCNG-CNCLNCHNTLE 417
                              *************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18202.8E-40128281IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.11E-32137383IPR029058Alpha/Beta hydrolase fold
PfamPF126974.1E-8147382IPR000073Alpha/beta hydrolase fold-1
Gene3DG3DSA:3.40.50.18202.8E-40314394IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5163410.424381443IPR005172CRC domain
PfamPF036381.0E-4394415IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
METLTNDTIE LRSEFLHVLP CQRLSKVLVK NSILFLIVSN LLITGAMETH EAVDFRSEFL  60
RVLLSRRLGQ VPLLAECSKP VEDPVFQSAV PSTAALESCP KEHIDNLKDM LKEENIHLHT  120
EAGEQGRLPL LILSLKEKKS EDRRPAVVFM HGTNANKEWL RPWLEAFASR GYVAIGLDSR  180
YHGERANSKT AYGDALISSW KNGNTMPFIF DTVWDLIKLA EYLTQREDID PQRIGITGIS  240
LGGMHAWFAA AVDTRYSVAA PLIGVQGFRW AIDNDAWQAR VDSIKPLFEE ARIDMGKSEI  300
DKEVVEKVWD RIAPGLATQF DAPYSVPVIA PRPLYLLNGA EDPRCPLGGL VVPVKRAKKA  360
YKKTASPGNF KFVAEDGVGH TVTSFMIKES SDWYCGCFAS GSYCNGCNCL NCHNTLEKET  420
ERQEAIKAIL ERKRNPDAFK PKIAGSPHGT NDLQVSSCYF IFKLGYNAKC ETDTRRKNEK  480
VSSLDPAQRD ANENEINDSP DCVIDAVRMD EKPISPATRA LMCDEEHVNI SEKETSARMR  540
TTQDKEVRDT SSEVYLEQEK QIFVMLRRFT SADFFP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00293.1_g00033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433306.10.0PREDICTED: uncharacterized protein LOC108805841
TrEMBLA0A0D3AXL50.0A0A0D3AXL5_BRAOL; Uncharacterized protein
STRINGBo2g158490.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.13e-33Tesmin/TSO1-like CXC domain-containing protein