PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00293.1_g00032.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 383aa    MW: 43236.6 Da    PI: 6.1971
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00293.1_g00032.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.7e-1489127241
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                              ++++C+Ck s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  Rsa1.0_00293.1_g00032.1  89 KQRHCKCKASRCLKLYCECFASGSYCNG-CNCLNCHNTLE 127
                              789*************************.********976 PP
2TCR48.51.7e-15165203240
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              +++gC+C++s ClkkYCeC++a+  Cse+C+C dCkN e
  Rsa1.0_00293.1_g00032.1 165 HSRGCHCRRSGCLKKYCECYQANIRCSENCTCRDCKNFE 203
                              789**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-1588128IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.7989204IPR005172CRC domain
PfamPF036385.0E-1191125IPR005172CRC domain
SMARTSM011142.5E-17164205IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-12167202IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEKPDRDSDS NRNRFARQSD SSVPVEAEMD SSNESEMKQS HSVLDSREED LPSHPQTPPS  60
GSEKQPSAIT PPQKVPVHRN QEDDGTPSKQ RHCKCKASRC LKLYCECFAS GSYCNGCNCL  120
NCHNTLEKET ERQEAVMAIL ERNRDAFKLK IAGSPHGLMN DKQEHSRGCH CRRSGCLKKY  180
CECYQANIRC SENCTCRDCK NFEGSEEILL TRYLHLPELR TRNSAPHSVA ARGSSSAFPH  240
LDQNQTVDYV VRDGDTSLFT VPNNQAVSGS TTGTYRSSLS NTTQLRPVKE LYSLLVSKSV  300
DAEKQMSEKE TVAPERTSQE KEDKDRSSEV YAEQEKQILS CFRDHLYELL NRLGGSVDGT  360
NIQKDNTDPS RKEPEDEEQT HRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-279320714126Protein lin-54 homolog
5fd3_B8e-279320714126Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00293.1_g00032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433308.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY841e-97TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A398AIB21e-174A0A398AIB2_BRACM; Uncharacterized protein
STRINGBra020513.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-100Tesmin/TSO1-like CXC domain-containing protein