PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00288.1_g00021.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 387aa MW: 43264.6 Da PI: 7.6192

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00288.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	34	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++e+ aL++a+++++ +l rg+l++++W++v++ + +g ++p+qC++k+e+l+kry+ +k++ ++ + ss++ +f Rsa1.0_00288.1_g00021.1 34 CWTDEETAALVDAYKDKWFALCRGNLRAADWDDVAASLpTLGGPAKTPIQCRHKIEKLRKRYRGEKQRCLNKpPGKFSSSWDLFPV 119 8***********************************55556699*******************9887745677899999988 PP trihelix 85 le 86 l+ Rsa1.0_00288.1_g00021.1 120 LD 121 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-20	33	123	No hit	No description
PROSITE profile	PS50090	6.76	35	92	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MSTPDNESPV ATATDPSTAV TVATTATRRV PPPCWTDEET AALVDAYKDK WFALCRGNLR 60 AADWDDVAAS LPTLGGPAKT PIQCRHKIEK LRKRYRGEKQ RCLNKPPGKF SSSWDLFPVL 120 DAMEFASVAS PAAAEPSDHD LDHEEDEGNG VGGFRVRSKR SLMSTPREGF GVRSRVKSQM 180 KMYGGGFDSD HDSGGGFGLK RRYNGHPKVN AEFDADSDDE ILLAPKTTRL RGSHHGGAGF 240 PLKSYGDRSF ASHGFKAKNF SNNFSPEMGY EDEFDDEREG FKPRVHNSRT SSRVNGYSYP 300 RVSRLKQEPM NEPDPIDEVV SSVKMLTEMF VRVEKSKMEM MREMEKARME MELKHCQMML 360 ESQQQIIGAF VEALSEKKST NARRTVS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MSTPDNESPV ATATDPSTAV TVATTATRRV PPPCWTDEET AALVDAYKDK WFALCRGNLR  60
AADWDDVAAS LPTLGGPAKT PIQCRHKIEK LRKRYRGEKQ RCLNKPPGKF SSSWDLFPVL  120
DAMEFASVAS PAAAEPSDHD LDHEEDEGNG VGGFRVRSKR SLMSTPREGF GVRSRVKSQM  180
KMYGGGFDSD HDSGGGFGLK RRYNGHPKVN AEFDADSDDE ILLAPKTTRL RGSHHGGAGF  240
PLKSYGDRSF ASHGFKAKNF SNNFSPEMGY EDEFDDEREG FKPRVHNSRT SSRVNGYSYP  300
RVSRLKQEPM NEPDPIDEVV SSVKMLTEMF VRVEKSKMEM MREMEKARME MELKHCQMML  360
ESQQQIIGAF VEALSEKKST NARRTVS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00288.1_g00021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451181.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	O23550	1e-103	FRIP2_ARATH; Protein FIP2
TrEMBL	A0A3P5Z9K1	0.0	A0A3P5Z9K1_BRACM; Uncharacterized protein
TrEMBL	M4FG83	0.0	M4FG83_BRARP; Uncharacterized protein
STRING	Bra040110.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-24	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]