PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00284.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 449aa    MW: 48005.4 Da    PI: 7.9504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00284.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-124873227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C +++rtG C yG+rC+F+H++
  Rsa1.0_00284.1_g00025.1 48 DEPDCIYYLRTGVCGYGSRCRFNHPQ 73
                             6899********************97 PP
2zf-CCCH38.81.5e-1295120227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++ C++f+rtGtCk+G++Ck++H++
  Rsa1.0_00284.1_g00025.1  95 GQPVCQHFMRTGTCKFGASCKYHHPR 120
                              5789********************96 PP
3zf-CCCH39.87.7e-13144168226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG+Ck+G++C+F+H+
  Rsa1.0_00284.1_g00025.1 144 GEKECSYYMRTGQCKFGSTCRFHHP 168
                              7899********************9 PP
4zf-CCCH421.5e-13279304126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C++f+rtG Ck+G++C+F+H+
  Rsa1.0_00284.1_g00025.1 279 PGEPDCQYFMRTGDCKFGASCRFHHP 304
                              5789*********************9 PP
5zf-CCCH23.59.9e-08324349126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++t++C++fa+ G+Ck+G+  kF H+
  Rsa1.0_00284.1_g00025.1 324 PGTAPCSHFAQHGICKFGPDFKFDHS 349
                              68*****************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1084674IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-44673IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-104873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27793121IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-695121IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-1095120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657142170IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6142169IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4148167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7278305IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6283306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5284304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.075323351IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068323350IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5324349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMERYDRAGE ERSRADPPPP GTETGLEGSM WRLGLRGGGG EPFPERPDEP DCIYYLRTGV  60
CGYGSRCRFN HPQNRAPVLG GGLRTEPGEF PERMGQPVCQ HFMRTGTCKF GASCKYHHPR  120
QRGGDSVNTP PVSLTYMGFP LRPGEKECSY YMRTGQCKFG STCRFHHPLP PSAQPPPPQQ  180
LSTGSAVYPS LQSQSGVYVA RPQLLPGSYV QSPYGTYSQM ILPPPGMVPY SGWNPYQASV  240
SAMPSPGSQP SIGSSSVPLA SAYQSGSSSN KEQSFPQRPG EPDCQYFMRT GDCKFGASCR  300
FHHPLEAASP KRVTLSNIGL PLRPGTAPCS HFAQHGICKF GPDFKFDHSM GSSSLSYSMS  360
ASSLTDMPVA PYPLGSSTLA PSSSSSSTSD QRTELHSSSS VKPKNTTSGG SETVSAGVST  420
SMTGGVSQSE PPAETKTDDS ASVEVETSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00284.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442996.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A397XL790.0A0A397XL79_BRACM; Uncharacterized protein
STRINGBra002167.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]