PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00278.1_g00019.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 318aa    MW: 35670.2 Da    PI: 5.7899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00278.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.1e-49181471128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                              lppGfrFhP+d+elv++yL ++  g++++ +     + +vd++k+ePwd+pk++  + k+wyf+s+rd+kyatg r+nrat++gyW
  Rsa1.0_00278.1_g00019.1  18 LPPGFRFHPKDDELVCDYLMARSLGDNINQTPpplLLIQVDLNKCEPWDIPKTACVGGKDWYFYSQRDRKYATGLRTNRATATGYW 103
                              79***********************996664344358999***********8777799**************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              katgkd+++l+ k++lvg++ktLvfy+grap+g+k+dWvmhe+rl
  Rsa1.0_00278.1_g00019.1 104 KATGKDRAILR-KSKLVGMRKTLVFYQGRAPRGRKSDWVMHEFRL 147
                              **********9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-589174IPR003441NAC domain
PROSITE profilePS5100554.65118173IPR003441NAC domain
PfamPF023651.8E-2519147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESEEKKESS ISTVEAKLPP GFRFHPKDDE LVCDYLMARS LGDNINQTPP PLLLIQVDLN  60
KCEPWDIPKT ACVGGKDWYF YSQRDRKYAT GLRTNRATAT GYWKATGKDR AILRKSKLVG  120
MRKTLVFYQG RAPRGRKSDW VMHEFRLQGS FDPPTLNSPE VQEDWVLCRV FHKNTEGVLS  180
RDNVGSCFDE TASASLPPLM DSYINFDQEP SSYLGDDQHF ITNEQVPCFS NLSKNQTLTN  240
SVSELKKNPI PLFTGGSAPT RLPGLDSFYS SDQMVLRALL SQLTKIDGGI EVKEAQSYGE  300
GSSESFLTDI GIPSTAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49121769171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00278.1_g00019.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667490.0KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450146.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE60.0NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A3P6BS460.0A0A3P6BS46_BRAOL; Uncharacterized protein
STRINGBo3g185760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.20.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]