PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00278.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 84aa    MW: 9458.77 Da    PI: 4.3441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00278.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.29.3e-21654150
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                             lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp +
  Rsa1.0_00278.1_g00003.1  6 LPPGFRFHPTDEELVAYYLDRKVNGRTIEL-EIIPEVDLYKCEPWDLPGR 54
                             79****************************.99**************953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-21355IPR003441NAC domain
PROSITE profilePS5100520.479684IPR003441NAC domain
PfamPF023651.9E-9749IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RTIELEIIPE VDLYKCEPWD LPGRFELPPV  60
SSRTDGVADI PVNGVEGRVC RGET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-172541163Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00278.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104136.11e-32PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI54e-30NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A397YME53e-31A0A397YME5_BRACM; Uncharacterized protein
TrEMBLA0A3P6BE603e-31A0A3P6BE60_BRACM; Uncharacterized protein
TrEMBLM4CGK23e-31M4CGK2_BRARP; Uncharacterized protein
STRINGBra003335.1-P5e-32(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-34NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]