PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00274.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25389.8 Da PI: 6.4948 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.3 | 2.3e-21 | 108 | 201 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++ +lk + ++lp + + +++ + k+++l +++g+sW+v ++++ + g+y++++GW++F+++n+ + gD +vF ++g+ + Rsa1.0_00274.1_g00003.1 108 AEVTDTNLKDDKMYLPVEAMCCTALNQ-QCKEVKLVNKQGNSWSVSFRFSESEGTYYISRGWRKFCRDNRCRNGDLFVFNVVGDGT 192 567889999*********984447765.668*****************************************************99 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++++ v+ Rsa1.0_00274.1_g00003.1 193 TTPLLCVCL 201 999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-17 | 104 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-17 | 105 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-15 | 105 | 203 | No hit | No description |
PROSITE profile | PS50863 | 13.789 | 105 | 203 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-18 | 106 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-19 | 109 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MTTPQEPHFF KPLLPGFQTG VTIPLAFFSK HIQGTHINKP WKLLSDASDE SWEVIREGRT 60 LTKGDMVYHV TPFGPSCSEI LYNHPHIVNE EAEADDAPIF SYDYCFLAEV TDTNLKDDKM 120 YLPVEAMCCT ALNQQCKEVK LVNKQGNSWS VSFRFSESEG TYYISRGWRK FCRDNRCRNG 180 DLFVFNVVGD GTTTPLLCVC LKRKECTDQK LSNNFSIASS SRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00274.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155346 | 2e-86 | AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence. | |||
GenBank | AP011622 | 2e-86 | AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022543999.1 | 1e-127 | B3 domain-containing protein REM9-like | ||||
Refseq | XP_022558610.1 | 1e-127 | B3 domain-containing protein REM9-like isoform X2 | ||||
TrEMBL | M4F4R3 | 1e-126 | M4F4R3_BRARP; Uncharacterized protein | ||||
STRING | Bra036066.1-P | 1e-127 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-41 | B3 family protein |